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EST details — SGN-E394809

Search information 
Request: 394809Match: SGN-E394809
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183528Clone name: TUS-42-G14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183528 is on microarray TOM1 spot ID 1-1-3.3.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C469 [cLEB-3-J17] Trace: SGN-T22847 EST: SGN-E203101 Direction: 5' Facility: TIGR
Clone: SGN-C469 [cLEB-3-J17] Trace: SGN-T22848 EST: SGN-E203102 Direction: 3' Facility: TIGR
Clone: SGN-C183528 [TUS-42-G14] Trace: SGN-T195034 EST: SGN-E393708 Direction: 5' Facility: INRA
Clone: SGN-C183528 [TUS-42-G14] Trace: SGN-T196025 EST: SGN-E394699 Direction: 5' Facility: INRA
Clone: SGN-C183528 [TUS-42-G14] Trace: SGN-T196025 EST: SGN-E399264 Direction: 5' Facility: INRA
Clone: SGN-C183528 [TUS-42-G14] Trace: SGN-T200298 EST: SGN-E399263 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394809Length: 542 bp (853 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E394809 [] (trimmed) AAAAAAAAAGTTTATGAATATAGCATATAACTTCTTCAACATTACAGTAACTCCGACAACATTATAGCCAATATAATTACGATAACTCCAACAAC
ATTATAGCCAATATAATTACAGTAACTCCAACAACATTACAGCCCTACTGGAACTAGAATTTTATTTGGGGATATTATTGGGAATTAATATGAAG
AAACAAGCACAACAAGGGGATACAATAATAAGTTCTATATAGACACACTGTTGGGGATTCCTTTGCCTGGGAGTCCCTCTTCACTGGGGGGAAAG
AGCAAAGTATATGGAACTTTAACAGGCCCTGACCTGTTCTTCTTTTTCTGATTATCACCATTCATCTGAATAATTCGATCCTCGATCTCACCCAA
CTTCTTTCCGAACCTCTCAAAAGCTGAAAGTGGTTCTTGATCCTTTGTCCATTCAGGGGAGTCCCTCTGTCCGAGGTAAAGGGTATCCGAAGCAT
GCCTTGACAAGAGCTCTATAAGGGAAATTCCAACCAATGTCTGCAGCTGAGGAGTGATTGTTTTGAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394809] SGN-U577893 Tomato 200607 Build 2 33 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196135 [Download][View] Facility Assigned ID: FA0AAD30BD07FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0068 Quality Trim Threshold: 14.5