EST details — SGN-E394957

Search information 
Request: 394957Match: SGN-E394957
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180452Clone name: TUS-34-G10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180452 is on microarray TOM1 spot ID 1-1-7.3.19.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C29752 [cLEF-54-C8] Trace: SGN-T63379 EST: SGN-E246025 Direction: 5' Facility: TIGR
Clone: SGN-C180452 [TUS-34-G10] Trace: SGN-T196284 EST: SGN-E394958 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394957Length: 622 bp (843 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E394957 [] (trimmed) ACAACACTACTATTACATCTTTCAACATGAAATTTTACAGCAAGTACATCAACTACGCCATTAGGTGAGAAACAGAGCCGATTCGAAGACTTTAA
TACAGAAACAGAACGACTTCAAACACTACAGATACGATTATTTTTTATTTGCCCATACAAGGATACAATAAATTCACATATTTTAACCAGAGATC
TCAATGGACTTGACATCAGGCTTCTTCACCTCCTCCTTCGGAACAGTAACAGTAAGCACTCCATTCTCCATAGACGCCTTAATTTGATCCATCTT
TGCATTCTCCGGAAGTCTAAATCTTCTCATGAATTTCCCGCTGCTGCGTTCCACACGGTGCCAAGTATCGTTCTTGGCTTCTTTCTCCACGTTCC
TCTCTCCGCTGATCTGAAGAACACGATCCTCTTCGATCTCCACTTTGACTTCCTCCTTCTTAAGCCCTGGAAGATCAGCCTTGAACACATGAGCT
TCTGGAGTTTCCTTCCAGTCGACTCGAGTGTTGGCAAATGCAGAGGTCTCCCCGGAATTTGAAACTGTGAAGCCTAATTCCTTGAATGGATCAAA
TACGTCAATTGAAAAAGGATCGAACACGCTGGTGCTTCCGCGGTCGCCGAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394957] SGN-U578203 Tomato 200607 Build 2 63 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196283 [Download][View] Facility Assigned ID: FA0AAD22BD05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.971 Expected Error Rate: 0.0174 Quality Trim Threshold: 12.5