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EST details — SGN-E395050

Search information 
Request: 395050Match: SGN-E395050
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180771Clone name: TUS-35-D17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180771 is on microarray TOM1 spot ID 1-1-8.4.17.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C69335 [cLEN-9-M9] Trace: SGN-T88959 EST: SGN-E275087 Direction: 5' Facility: TIGR
Clone: SGN-C180771 [TUS-35-D17] Trace: SGN-T1645 EST: SGN-E378711 Direction: 5' Facility: Giov. Lab
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Sequence 
Sequence Id: SGN-E395050Length: 638 bp (829 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E395050 [] (trimmed) AGAATGGAAATTCAAAAGGAGTTTGATTTAACGGTAGTTCCAACAGAAGGTGAAATTGATGCACCATTATCGCCAAGGAAGAATTTATGTCTCAG
TGTGGTGGAATCCGATATAAAAAATGAAACGTCTTTTCAAAAACTTGACATGATTTTGACTCAATATTTAGAGACATTGTCAAAACGGAAGAAGT
ATCATATAGGTTATCCAACAAACATGCATTATGAGCATCATGCCACTTTAGCCCCACTTTTGCAATTTCATTTGAACAATTTTGGAGACCCCTTT
GCTCAGCACCCTACAGATTTTCATTCAAAAGATTTTGAAGTGGCTGTATTAGATTGGTTTGCACAACTCTGGGAAATAGAGAAAGATGAATATTG
GGGATACATTACTAGTGGTGGCACTGAGGGCAATCTCCATGGCCTTTTGGTTGTGTAGGTTTCACTTTCAGAGGCGAATCTAGTTTTTGAGCTAC
GAATTTATTTATATAGTCGGAGATGTCTAAATGATATAATGTGCTTTTATCACTTTCACTATGCATTATTATATATTTGTGCAGAAGAGAGCTAC
TTCCAAGTGGGATATTATATGCATCAAAAGATTCACATTACTCAATTTTCAAAGCAACAAAAATGTAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395050] SGN-U579037 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196376 [Download][View] Facility Assigned ID: FA0AAD23CB09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.952 Expected Error Rate: 0.0038 Quality Trim Threshold: 14.5