EST details — SGN-E395166

Search information 
Request: 395166Match: SGN-E395166
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183088Clone name: TUS-41-E6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183088 is on microarray TOM1 spot ID 1-1-3.1.3.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C34298 [cLEG-30-H10] Trace: SGN-T69138 EST: SGN-E255412 Direction: 5' Facility: TIGR
Clone: SGN-C183088 [TUS-41-E6] Trace: SGN-T199731 EST: SGN-E398405 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395166Length: 576 bp (844 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395166 [] (trimmed) AGTCACAAGTTCCATAAATTGGGGGAGCTAAGGAGATCCCAGCATTTTCTCAAGTTGGATCTCCAAAGAGCCTTCTCCAATTTTTACCATTTCTT
GAAATGGTTCAATCACCTATGAGCAGAAAGCTAGTAAGAAATGGTGGCCTGTTTTATCCAGTTATTGGGTTTGCACTGTTTGTTACTTTTCTTTA
TTTGGCATTTGGAAACTTGTGGGGTTTCAATTTCAACAGAGAAGAAATAAAGTTAAGTTTTGTGGAGAGAAATGGAACTCAATTCTTTGTGGATG
GTAAAGCTTTTTATATAAATGGATGGAATTCTTACTGGTTAATGGACCATGCTGTGGATTATAGTAATAGACCAAGGATTAAAGGGATTTTACAA
GCTGGTGCTAAGATGGGGCTCAGTGTGTGTAGAACTTGGGCTTTTAATGATGGTGGATACAATGCTCTGCAGATTTCCCCTGGTAGATTTGATGA
AAGAGTGTTTAGAGCATTGGATCATGTTATTGCAGAAGCAAGAAAGAATGGCATTAGATTGATGCTTAGCTTGGTTAACAACCTGCACGCATTCG
GGGGGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395166] SGN-U576195 Tomato 200607 Build 2 20 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196492 [Download][View] Facility Assigned ID: FA0AAD29BC03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.955 Expected Error Rate: 0.0028 Quality Trim Threshold: 14.5