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EST details — SGN-E395169

Search information 
Request: 395169Match: SGN-E395169
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183094Clone name: TUS-41-E12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183094 is on microarray TOM1 spot ID 1-1-5.1.3.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C35659 [cLEG-35-M13] Trace: SGN-T70435 EST: SGN-E255951 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E395169Length: 636 bp (863 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E395169 [] (trimmed) GCTATACGAGGTCATGGCAACCAAGAGTAAGATTTACTTTGTGATCGAACATGCCAAAGGTGGCGAGCTTTTCAACAAACTGACAAAGGGGAGGC
TCACAGAAGATGTTGCTAGAAAGTTGTTTCAGCAACTGATCAATGCAGTTGAATTTTGCCACAGCCGAGGTGTTTATCACCGTGATCTCAAACCG
GAAAATCTCCTACTGGATGAGAATGGAAACCTAAAGGTCTCAGACTTTGGTTTGAGTGCATTAGCAGAGTCTAAGCGACAAGATGGGTTACTCCA
CACAACCTGTGGTACACCAGCATATGTTGCTCCCGAGGTGATTGGTAGAAAAGGATATGAGGGTGCTAAAGCTGACATCTGGTCTTGTGGGGTGA
TTTTATTTGTCTTGTTGGCTGGTTATCTTCCATTCTATGACTTAAATCTTATGAATCTGTATAGGAAGATATGCAGGGCAGAGTACAAATGCCCT
AATTGGTTCCCTCTAGAAGTGCGTAAACTTCTCTCTAGGATCTTCGACCCAAACCCTCGTAAAAGGATTTCAATCGCCAAAATTAAGGAAAGCTC
CTGGTTTAAGAAAGGATTGGAATCTAAACATGTGGGAACTAAACAAGTACTGAAACCAAAATGTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395169] SGN-U572172 Tomato 200607 Build 2 62 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196495 [Download][View] Facility Assigned ID: FA0AAD29BC06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0045 Quality Trim Threshold: 14.5