EST details — SGN-E395180

Search information 
Request: 395180Match: SGN-E395180
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183152Clone name: TUS-41-G22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183152 is on microarray TOM1 spot ID 1-1-3.3.3.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C67246 [cLEN-17-P3] Trace: SGN-T90873 EST: SGN-E276452 Direction: 5' Facility: TIGR
Clone: SGN-C183152 [TUS-41-G22] Trace: SGN-T199465 EST: SGN-E398139 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395180Length: 615 bp (818 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395180 [] (trimmed) ATAATTTTCATCCTTGTTCTTCTTTTTGTAGACTCATGTTTCAACATTGTTGAAGGAAGAATCCCTGGTGTTTACTCTGGTGGTTCATGGGAAAC
TGCACATGCTACATTTTACGGCGGAAGTGATGCTTCTGGAACAATGGGCGGTGCGTGTGGTTATGGAAATTTATACAGCCAAGGATACGGAGTTA
ACACAGCAGCACTGAGTACTGCTTTGTTTAACAATGGATTAAGTTGTGGAGCCTGTTTTGAACTTAAATGTACAAATACTCCTAATTGGAAATGG
TGTCTTCCTGGAAACCCTTCCATTTTAATCACAGCTACCAATTTCTGCCCACCAAATTACGCGTTGCCAAATGACAATGGTGGCTGGTGTAACCC
TCCTCGCCCTCACTTTGACCTCGCTATGCCTATGTTTCTCAAACTTGCTCAGTACCGCGCTGGCATTGTTCCTGTAACTTATCGCAGGATCCCAT
GCCGAAAGCAAGGAGGAATCAGATTTACCATCAATGGATTCCGTTACTTCAACTTAGTGTTGATCACGAATGTAGCAAGTGCAAGGGATATTATT
AAGGTTTGGGTAAAAAGAACAAAAACAAATTGGATTCCATTGAGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395180] SGN-U578473 Tomato 200607 Build 2 46 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196506 [Download][View] Facility Assigned ID: FA0AAD29BD11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0087 Quality Trim Threshold: 14.5