EST details — SGN-E395396

Search information 
Request: 395396Match: SGN-E395396
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173500Clone name: TUS-16-E18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173500 is on microarray TOM1 spot ID 1-1-7.1.18.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2730 [cLEC-16-P15] Trace: SGN-T27075 EST: SGN-E205186 Direction: 5' Facility: TIGR
Clone: SGN-C173500 [TUS-16-E18] Trace: SGN-T196723 EST: SGN-E395397 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E395396Length: 702 bp (883 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395396 [] (trimmed) ATATCGATGATGTTTATTTAACTTAATAATGAAGACAAGATACAACCCTGCATCACACTAATAACATTAGCTAACATCTTCCTTCTTAGCATCAT
TTGATTTTTTTCCTCCTTTACCTGCATCACAATTTATAAGAGGGGAAATAAAAAAAGGAAAATAAAAATAAGATTAAAAAAAAATACATTATTTT
ATTGTAGACATATGTAATTAATTAACAGTATATTTGATATGACATATAAATCCTTTTTACAAGAAAACATGAAAAAGTCATTTTCTGCTATTTTT
TTTCTATAGAACTTGTTGACATTATGTACATATTTTTGTTTAAAGACATGTTTAGAAAAAAATTGTAAGAAATAATGTTTTTGATGAGCTTTCCA
TCAGAAATATCATGTGTTTTTAGTAGTGGTCCAATTAGCAAATATATTTTCCAGGAAAATTAATACTTTCTATTGAAAAGACGATAATAACAACA
ATAACATATTCAATGTAATCTTACGAATGAGATCTGGAGAGAGTAGGATATATGCATATCTTACTTCCCATCGAAAAAACAACAAAAATAGAAAA
ACATCGTATCTTACTTTCTATCGAAAAAACAACAACAAAAAAAAACATCAATATATTTGATGTAATCCTATAAGTGAGATATCATGAGATCTGAT
ATTCTAGAGAAAATATACACATATATTACTTCTATCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395396] SGN-U577049 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196722 [Download][View] Facility Assigned ID: FA0AAD4BC09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.893 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5