EST details — SGN-E395580

Search information 
Request: 395580Match: SGN-E395580
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173508Clone name: TUS-16-F2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173508 is on microarray TOM1 spot ID 1-1-7.2.18.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C173508 [TUS-16-F2] Trace: SGN-T199799 EST: SGN-E398473 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395580Length: 610 bp (852 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395580 [] (trimmed) GAATAGACAAAGGCCCCTCCTAATTGTGTCCGAAGATGTGGAGAGTGAAGCACTCGCTACACTTATTCTGAACAAGCTTCGTGCTGGAATCAAGG
TTTGCGCCATAAAAGCACCAGGATTTGGTGAAAACAGGAAGGCTAATTTGCAAGATTTGGCTGCTTTAACTGGAGGCCAGGTCATTACCGAAGAA
CTTGGAATGAACATTGAAAATGTGGAGTTGGAGATGCTGGGTAAATGCAAAAAGGTGACCATCTCCAAGGATGACACTGTTGTTCTTGATGGTGC
GGGTGAGAAGAAGGCCATAGAGGAGAGATGTGAACAGATTAGATCAGCAATTGAACTGAGCACGTCTGATTATGACAAGGAGAAATTGCAGGAAA
GACTAGCTAGGCTTTCAGGGGGTGTTGCAGTGTTGAAGGTAGGAGGAGCTAGTGAAGTCGAGGTTGGTGAGAAGAAAGACAGAGTTACAGATGCT
TTGAATGCCACAAAAGCTGCTGTCGAGGAAGGAATTCTTCCAGGTGGTGGGGTTGCACTTCTTTACGCATCAAAAGAACTGGACTCATTGCCAAC
AACCAACTTTTGACCAAAGATTGGTGTTCCAATTATTCAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395580] SGN-U570702 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196906 [Download][View] Facility Assigned ID: FA0AAD4DC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0043 Quality Trim Threshold: 14.5