EST details — SGN-E395890

Search information 
Request: 395890Match: SGN-E395890
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174199Clone name: TUS-18-B21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174199 is on microarray TOM1 spot ID 1-1-4.2.16.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7251 [cLEC-38-F24] Trace: SGN-T31728 EST: SGN-E209193 Direction: 5' Facility: TIGR
Clone: SGN-C174199 [TUS-18-B21] Trace: SGN-T197217 EST: SGN-E395891 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395890Length: 652 bp (822 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E395890 [] (trimmed) CGCCCCACAGGGACCAATATATTACAACTTGCTTGACCTCCCCCCCCCGCTAACATTTAAATTTTATACGAAACACTATTAAAAAAGAAGCAAAA
TATCATTTAATTTGTATATGTGATTTTCTTAATGCTGTAGACAGATTACTACGGGTACACGCGCAAAGAGCATGCCTACCTACAGTTGTATCTGA
AAGATCGATCAATCATAAAATTTATTTTCGTTTCACCTTCCCATTTGTATGGTGTGCATCTAACAGCACTAGCATATCATCAAACTTCTTTACAG
CCTTGCATGTTTCTTACCGCTTTGTTTTACCAAGCACTTCGATATATTTTTTTGGGACCCCATACTGTTCAACAAGGTATCTTGCAAGATCATCA
ATAACTCCTCCTTGAACCAAAACTTCTTCACCTTTCTTACCTGGAAGTTCTGCCACAGTAGTGCTACAGGCACACTTCTTCTGCAACTCTGAAGC
CAGAGTCTCTGCATCCAACAGAAATGACTCCATTCCAGAAAGTTTAGTCACTTTCTTGTTCCCTTGCCTCCGCTCTGTCATTATCTGGATTGGCT
TCAAGGCTCCTTTGCGAACAACTGTATCGTTTCCTCTAGTCACACAATGATGTGCTTGCATCCTACCAATAATTGTTTGCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395890] SGN-U573954 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197216 [Download][View] Facility Assigned ID: FA0AAD6CA11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0232 Quality Trim Threshold: 14.5