Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E396000

Search information 
Request: 396000Match: SGN-E396000
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174284Clone name: TUS-18-F10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174284 is on microarray TOM1 spot ID 1-1-7.2.16.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7824 [cLEC-40-G15] Trace: SGN-T32109 EST: SGN-E210045 Direction: 5' Facility: TIGR
Clone: SGN-C174284 [TUS-18-F10] Trace: SGN-T199868 EST: SGN-E398542 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396000Length: 598 bp (897 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396000 [] (trimmed) CAGAAAGCTTTTAATTAAAGTTTTCTGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTCGAAAC
TAGGGCTCTCTCTCCAAATCCCCCAAAATTAATTCAAAAATTCATGCCTGACCCAGAAACTCCTGATTATGAAAAACTCAAAACAAATCCTGACA
AGGCATACTTGAAAACAATCCCTCCTCAACTACAAACTTTACAAGGATTTTCTCTCATAAAAATATTATCAAGGCATGCTTCAAATGAAATTTAC
CTTGAACAACGGGACTCATCCAAATGGACAAAGGATCAAAAATCCTTTGCTGCTTTTGAAAAATTTGGGAAAAATTTAAGTGAAATCGAGGATCA
ATTTATACAAATGATTGGTGATGAGCAATGGAAAAATAGGTCAGGGCCTGTTAAATTTCCATATACTTTGCTCTTCCCTACAAGTGAACAGGGAC
TCACAGGCAAAGGAATACCTAATAGTGTGTCAATATAGTACTTTCATTTAAATCTACATCGTCAAGTTTCATTTTTTTCTTTTATTCAATTACAA
CCTCAGGTTTGTGTGATGTAACTTTTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396000] SGN-U580325 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197326 [Download][View] Facility Assigned ID: FA0AAD6DC05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.905 Expected Error Rate: 0.0235 Quality Trim Threshold: 12.5