Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E396001

Search information 
Request: 396001Match: SGN-E396001
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174286Clone name: TUS-18-F12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174286 is on microarray TOM1 spot ID 1-1-5.2.16.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7830 [cLEC-40-G22] Trace: SGN-T32147 EST: SGN-E210083 Direction: 5' Facility: TIGR
Clone: SGN-C174286 [TUS-18-F12] Trace: SGN-T197328 EST: SGN-E396002 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396001Length: 591 bp (849 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396001 [] (trimmed) AAGGGAAGAATATGATTATTGTCTTATTCAAATGTTCTACCAATGCATATAATACATATATATATATATATAGAAATATATTAAGAAAAAGTTAC
ATCACACAAACTTGAGGTTGTAATTGAATAAAAGAAAAAAATGAAACTTGACGATGTAGATTTAAATGAAAGTACTATATTGACACACTATTAGG
TATTCCTTTGCCTGTGAGTCCCTGTTCACTTGTAGGGAAGAGCAATGTATATGGAACTTTAACAGGCCCTGACCTATTTTTCCATTGCTCATCAC
CATTCATCTGTATAATTTGATCCTCGATCTCACTTAACTTCTTCCCAAATCTCTCAAAAGCAGCAATGGATTCTTGATCCTTTGTCCATTCGGAT
GAGTCCCGTTGTCCAAGGTAAATCTCATCTGATGCATGCCTTGATAATATTTCTATGAGAGAAATTCCTAGTAATGTCTGTAGTTGAGGAGTGAT
TGTTTTCAAGTATGCCTTGTCAGGATTTGTCTTGAGTTCTTCATACTCAGGAGTTCCTGGCTCAGGCATGAATCTTCGACTTAATGTTGGGCGAT
TTGGAGAGAGAGCACTAGTCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396001] SGN-U580560 Tomato 200607 Build 2 52 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197327 [Download][View] Facility Assigned ID: FA0AAD6DC06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5