EST details — SGN-E396068

Search information 
Request: 396068Match: SGN-E396068
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174530Clone name: TUS-18-P16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174530 is on microarray TOM1 spot ID 1-1-1.4.16.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23175 [cLED-4-L11] Trace: SGN-T49484 EST: SGN-E231715 Direction: 5' Facility: TIGR
Clone: SGN-C174530 [TUS-18-P16] Trace: SGN-T199879 EST: SGN-E398553 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396068Length: 639 bp (883 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396068 [] (trimmed) AGTACGTTGAGTCAGCTATACAGCTGGCTTCAGATGTTACATCTCTATCGAACTTGAGAATGAGTCTGCGAGAACTGATGTCAAAATCACCACTT
TGTGACGGGGCCAAGTTCACCCGAAACATCGAGTCAATATATAGGAGTATGTGGCGCAGGTACTGTGATGGCGATGTGCCATCTCTGAGGCGTAT
GGAATTATTACAGCAACAGCAGACACAAACTGAGTCGGTGGTTCCAGAAGAGTCTTCTGTGAATCCATCGGAAAGAACCATCACTTCTGCTCCTA
CAGACGGATCAATCAAAGAGAATGGATTTACTGCGGTACCAGCCTTGGCACTTAAATCTTCCACTAGTGAAGAAAATGGGGTGCAATCGAATCAC
AATGGTAATCATGGTAACCTGAGTTGAGAGTGGTAGTTGTTTGCTCTGTGAGTCTGTCCGCTTATAAGTGGGGAATGATTGGTAATAGAAGCCAA
GATTCAAGGACACAAGTCTTCAATAGCATGTCTGAAATGAGACCAAGCCTCTCTTGTATCATATAATTTACGGGGCAGTTATGCGCGCTATATTG
AACGGCTGATTATGGTTAATGTCTGCAGTCGCGTCTCTGTTGCAAATTGCGCAGGCATTATTTTTTTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396068] SGN-U585865 Tomato 200607 Build 2 16 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197394 [Download][View] Facility Assigned ID: FA0AAD6DH08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0029 Quality Trim Threshold: 14.5