EST details — SGN-E396178

Search information 
Request: 396178Match: SGN-E396178
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173780Clone name: TUS-17-A10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173780 is on microarray TOM1 spot ID 1-1-7.1.17.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5480 [cLEC-32-A23] Trace: SGN-T29770 EST: SGN-E207557 Direction: 5' Facility: TIGR
Clone: SGN-C173780 [TUS-17-A10] Trace: SGN-T191667 EST: SGN-E390341 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396178Length: 632 bp (845 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396178 [] (trimmed) CTGTTGCCGCTCAAACTCACCATCAATATTCACTATTCATGGACTTTGGGCTGATTACAATGACGGAACGTGGCCTGCATGTTGTTCTGGCCCCC
AATTTGATAAGGAGCAGATTTCAACATTGCGTAAGCCTATGAAGAAGTACTGGCCTTCTTTTAGTTGCAAGGCCACCTCAACTTGTCATCACGAA
AAAGGATCATTTTGGGCTCATGAGTGGGAAAAACACGGGACATGTTCTTATCCAGTTGTCCACGATGAGTATGAGTACTTCCTGATGACTTTGAA
TGTTTACTTCAAATATAACGTCACTGGAATTCTGTTTGAAGCCGGGTATGTACCCTCAAATTCTGAGAAATATCCACTGGGAGGCATCATTTCAG
CCATTCAAAATGCCTTTCATGCAACTCCAGAGTTGATATGCTCAGGCGATGCGGTGGAGGAACTAAGAATATGCTTCTATAAGGATTTACAGCCT
CGTGATTGTGCAAGTGGTTCTATCATCAAAAGTGGTAGAGTCTCTTCTGGGTCATGTCCTCAGTATGTCAGCTTGCCAGTAGTAAATGGATCAGG
GGGTAACAAACAAGTGGCTGGGTTCGGTCTCAAGCTTTGCTTTGCAGTTCACTTACTATTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396178] SGN-U578216 Tomato 200607 Build 2 34 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197504 [Download][View] Facility Assigned ID: FA0AAD5BA05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5