EST details — SGN-E396196

Search information 
Request: 396196Match: SGN-E396196
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176742Clone name: TUS-24-L20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176742 is on microarray TOM1 spot ID 1-1-5.4.9.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27770 [cLEF-45-H24] Trace: SGN-T61346 EST: SGN-E246611 Direction: 5' Facility: TIGR
Clone: SGN-C176742 [TUS-24-L20] Trace: SGN-T197523 EST: SGN-E396197 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396196Length: 538 bp (871 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396196 [] (trimmed) CACAAAAACAGACATTCTTATTAAAAAAATAATGATTTTAAAATACCCAATGGAGGCATCTCTAGTCATTTATCAAAAATATACATAATGCAAAC
TCATCACACAAAATTAAATGTTCCAATGAAAGATAGATAAGTTATTCAAAAGGCAAACTCGATGCACTAAGCTTTCACTACGCCCAAAGTCTGGA
AAAGGGCTAGATCACAAGGGGCATTTGGAACATGAATGGAAACTGAACATTTTGCCTTGGTGAAACAATTTAACACCAAAGGTCTTCTGTCTTCT
CTGATGTTTATAACCGTGGCACGGGAAAAAAAGCCCGTGGAGTCTCCCAATCAGTCATGACATGGTTACGCGTAATCTCCTTCAGTGAACGACAG
CCACTCAATGCCATCGTTAGCTCAAACTCATCGCGTATCATCTGCAGTGCTTTCTTGACGCGGGGGGCGGCATCAGCAGCCAATGACCAAATGAT
TGGTCGCCCAATAAACACGCCTGATGCACCAAGCGCCAGCGCTTTAAAGACATCTGTTCCACG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396196] SGN-U579320 Tomato 200607 Build 2 210 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197522 [Download][View] Facility Assigned ID: FA0AAD12DF10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0165 Quality Trim Threshold: 14.5