EST details — SGN-E396203

Search information 
Request: 396203Match: SGN-E396203
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176778Clone name: TUS-24-N8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176778 is on microarray TOM1 spot ID 1-1-1.2.9.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27858 [cLEF-45-M2] Trace: SGN-T61433 EST: SGN-E246698 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396203Length: 627 bp (884 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396203 [] (trimmed) TCTCTGCTGCAATGGACAATGAATCAAGCAGCAATGTCAGGCCGGATTCTGTTGTGACAGCAAATGGAACTGATATGGAACCAGTGGCTGATGAT
ATTTGGGAAGAGTTGCTCAGTGAAGATCTTATATCCGGGGATCGAGCAGCAGAGGAAGTAGTGGTTGTTGAACAACCTGAATTCGACGTGGAAGT
TGAAGATCTTGTTGTGAAAACACCTGAATGGGGTGAGGAATTACAAGACCTTGTGGATCAGCTTGGTTTCCTTTAGAGGTCACTCTTGTGTTCCT
CTGGCCTCCTCCACTATTCCAGTATCCTATATTGAGTTACTGCATTCAAATATATTGTAGCTAATGTACTTGTTATTTCTCTTCTATAGCAGGGA
AGGATAGAGTTATGGGTCGCCTAAAGCTAATTTTTTTAAAAATATTTTATACTTCATTAATATTTAGATTGTACTAATATTTTTTGGAAAGTGAA
GTGCAGAATTGATATTTTTCTTTTCATTTGATTCAATTTTTCAGGTTAAGATGCAGATATACTACTTTCTTTCATTTCAGGAAGCTTTGAGGCGG
TCTCTAGTAGCGCATGTTTACAAGTAATGCCACTTAAACAGCTATTTGTTTCTTAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396203] SGN-U569512 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197529 [Download][View] Facility Assigned ID: FA0AAD12DG04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0031 Quality Trim Threshold: 14.5