EST details — SGN-E396213

Search information 
Request: 396213Match: SGN-E396213
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176824Clone name: TUS-24-P6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176824 is on microarray TOM1 spot ID 1-1-3.4.9.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27958 [cLEF-46-C15] Trace: SGN-T61681 EST: SGN-E247270 Direction: 5' Facility: TIGR
Clone: SGN-C176824 [TUS-24-P6] Trace: SGN-T197538 EST: SGN-E396212 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396213Length: 676 bp (876 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396213 [] (trimmed) TCTAGGGTTTCATTTCATCGTTGAAATTAGGGTTAGGGTATCCATCCATCCATCAAGTAATCAATCATGCCGAAGAATAAGGGAAAGGGAGGAAA
GAACAGGAAGAGAGGGAAGAACGAAGCTGATGATGAAAAGAGAGAGCTTGTTTTTAAGGAAGATGGACAGGAATATGCTCAAGTTCTTCGTATGC
TTGGAAATGGCCGATGTGAAGCTATGTGTATTGATGGGACGAAACGTCTATGTCACATACGTGGTAAGATGCATAAGAAAGTTTGGATTGCCGCC
GGTGATATCATCCTTGTCGGACTCCGTGATTATCAGGATGACAAGGCTGATGTTATTCTGAAGTATATGCCAGATGAGGCAAGGTTGTTGAAGGC
ATACGGAGAGTTACCAGAGAACACTAGGCTCAATGAGGGTATTGCTAATTTGGATGAAGAAGATGAGAATGCCGCTGATGATTACATTGAGTTTG
AAGATGAAGACATTGACAAAATCTAAAATTCCTTATCTAAACAGTGCTATCACTGGGGTTTCCTGTTGGCCTCACAATTATTTCCTTGGAGCTTG
AGTTCAATACAAAAAGAAAGAGAGACCTTATATGTACCATCTTAATATGATTGAACTTTGTGCACTAGTACTTCTGTATGAAGATTTATGCTTTG
GTGATTTAAAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396213] SGN-U575182 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197539 [Download][View] Facility Assigned ID: FA0AAD12DH03RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0112 Quality Trim Threshold: 14.5