EST details — SGN-E396384
Search information |
Request: 396384 | Match: SGN-E396384 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C180873 | Clone name: TUS-35-H23 |
| ||
Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C180873 is on microarray TOM1 spot ID 1-1-2.4.17.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C66036 [cLEN-12-I11] | Trace: SGN-T89845 | EST: SGN-E276021 | Direction: 5' | Facility: TIGR |
Clone: SGN-C180873 [TUS-35-H23] | Trace: SGN-T199716 | EST: SGN-E398390 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E396384 | Length: 521 bp (869 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396384 [] (trimmed)
AAGTTTGAAAATCATTTATTTTCCACGAAAATATTTTCCTACCAACTAAAAAACAATATGTCAAGGTTCCCAACTTATAAACCAATCAACAAACT
AAAGTAAATTGCTTCAGCATTTGCACCATGGATTTATGAAAAGTTCACTTCTTATCTTATTCTTCCTTTTGTGATTAAGGACTTATTGTCTTGCC
AAGCTAAGGGGCCACAGAAATATGGTTTGAGCTCAAAAATAACTTCAAGACTCTATGATACACTTGCTTGCTATGTGGTTTGAGCTCATGATTGC
CCCAAAGACAGGCGTTGGCGGAACGAGTCGTGATGGCAAGGCAAAAATGAAGTCTACCAAATCATTCAGATTCTTATGTGAAGTGCAATCAATCT
GCATTCCAACAACTATCTTTTGTTTCATGTCTGCTACTCTTTTCTTCACATCTTTGCCTTCTTCCACTTAACATGAGTTTTCTTATTGTTTTCCC
TAAGACCGTTCTCTCGACAACCTCCAATTCAAACCCCACCTTGTAT
AAAGTAAATTGCTTCAGCATTTGCACCATGGATTTATGAAAAGTTCACTTCTTATCTTATTCTTCCTTTTGTGATTAAGGACTTATTGTCTTGCC
AAGCTAAGGGGCCACAGAAATATGGTTTGAGCTCAAAAATAACTTCAAGACTCTATGATACACTTGCTTGCTATGTGGTTTGAGCTCATGATTGC
CCCAAAGACAGGCGTTGGCGGAACGAGTCGTGATGGCAAGGCAAAAATGAAGTCTACCAAATCATTCAGATTCTTATGTGAAGTGCAATCAATCT
GCATTCCAACAACTATCTTTTGTTTCATGTCTGCTACTCTTTTCTTCACATCTTTGCCTTCTTCCACTTAACATGAGTTTTCTTATTGTTTTCCC
TAAGACCGTTCTCTCGACAACCTCCAATTCAAACCCCACCTTGTAT
Unigenes |
Current Unigene builds | |||||
[SGN-E396384] | SGN-U584032 | Tomato 200607 | Build 2 | 77 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197710 [Download][View] | Facility Assigned ID: FA0AAD23CD12FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.941 | Expected Error Rate: 0.0103 | Quality Trim Threshold: 14.5 |