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EST details — SGN-E396386

Search information 
Request: 396386Match: SGN-E396386
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180901Clone name: TUS-35-J3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180901 is on microarray TOM1 spot ID 1-1-6.2.17.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C66086 [cLEN-12-L1] Trace: SGN-T89924 EST: SGN-E276100 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396386Length: 489 bp (859 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396386 [] (trimmed) ATGACCCGAAGAAAGAACGAAGAGTACTGTGGGGATGGATTGGGGAAACTGACAGTGAATCTGCTGACCTGCAGAAGGGATGGGCATCTGTACAG
AGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACACATCTACTTCAGTGGCCAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCC
TACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTACTCCGTGTTGACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGG
ACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGGTTTCAGTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCA
TTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAACGCCAGTTTAACTTTTACCTTTCTAAAGGAGCTGATGGTCGTGCAGAGACTC
ACTTCTGTGCTGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396386] SGN-U578305 Tomato 200607 Build 2 440 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197712 [Download][View] Facility Assigned ID: FA0AAD23CE02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.971 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5