EST details — SGN-E396406

Search information 
Request: 396406Match: SGN-E396406
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181017Clone name: TUS-35-N23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181017 is on microarray TOM1 spot ID 1-1-2.2.17.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C66777 [cLEN-15-M5] Trace: SGN-T90557 EST: SGN-E274322 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396406Length: 618 bp (817 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396406 [] (trimmed) TTCAAGTCTGCCAGGGACAGTTCTGGTCATGGAAGTCATACAGCTTCAACTGCTGCTGGGCGTTATGTAGCTGATATGAATTACAAAGGTTTGGC
ATCTGGAGGAGCCAGAGGTGGTGCCCCAATGGCCAGGATAGCAGTGTACAAAACCTGCTGGAGTTCTGGTTGCTATGATGTTGATTTGTTGGCTG
CATTTGATGATGCAATTAGAGATGGGGTTCATGTCATTTCTATATCTTTGGGCCCAGATGCTCCCCAAGGAGATTATTTTAGTGATGCAATTTCT
GTGGGGTCATTTCATGCTGTTAGCCGTGGGATACTTGTAGTGGCCTCCGTTGGAAATGAAGGAACCTCTGGTTCAGCCACAAATTTAGCTCCTTG
GATGATCACAGTTGCAGCCAGTTCAACCGATAGAGATTTTACATCTGATGTTTTACTAGGAAATAGAGTTCAACTCACGGGTGAAAGTCTTAGCT
TATCTCAAATGCATACATCTGCAAAAATCATACCTGCTTCTGAAGCTTATGCTGGATACTTCACTCCTTATCAATCCAGGTGAAGCAAAAGTTAT
TGGCTAGATAGTTCTTTGAATAAAACTAAAGCCAAAGGGAAAGTTCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396406] SGN-U566126 Tomato 200607 Build 2 13 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197732 [Download][View] Facility Assigned ID: FA0AAD23CG12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0042 Quality Trim Threshold: 14.5