EST details — SGN-E396497

Search information 
Request: 396497Match: SGN-E396497
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176565Clone name: TUS-24-E11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176565 is on microarray TOM1 spot ID 1-1-6.1.9.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27014 [cLEF-42-E23] Trace: SGN-T60709 EST: SGN-E247665 Direction: 5' Facility: TIGR
Clone: SGN-C176565 [TUS-24-E11] Trace: SGN-T197861 EST: SGN-E396535 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396497Length: 709 bp (863 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396497 [] (trimmed) GTCAGACTGCATCTTCAGTGGGCTTTTCTGGTCAAGCAAACAATTCTCCATCCTATGGAGGCTACCCAACTCAACCTGGTCAAGCGTCACAGACT
GGTTTTGGACCCACAGGTGGTCAACCCACATCTGGTTTCCAACCTGCAGCAGGTTACTTTCCACAGTCTGGTTATCAGATTCCTGCCGGCTCCTC
TGTGCAGAGCAATGCCAATGCTGGTGGTTACAACACAGGATTAGGATCTACAGGTCCATTTGGTAACCAAATGGGTCAAACATCTGCTGGACAAC
CCTACCTTTCACAGCCAACTGGTGCAACCCACATGCCCTCACAGATGCATCTTCAATCTTCACAAAATCAAACAAGTAATGCTCTAGTGCTGACA
CAAACTACTCCAGCTTCAACAGCTCTTGTCGCCGAGGCGCAACCAGCCAAAGACAAATTCGAGACAAAGTCTACCGTTTGGGCAGATACATTGAG
CCGTGGACTGGTCAATTTGAACATTTCTGGAACTAAAACAAATCCATTAGCTGATATCGGAGTTGATTTTGATGCTATTAATCGCAAGGAAAAAA
GGATGGAGAAACCCAGTACAGCCCCCGTGATATCAACTATTAACATGGGCAAAACAATGGGTTCAAGTAACCGAATTGGCCGAACCTGGTGCAGG
TGCACTACGGGCTCCACCAAACCCAATGGTAGGTTCTGGCATGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396497] SGN-U576703 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197823 [Download][View] Facility Assigned ID: FA0AAD12AC06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.982 Expected Error Rate: 0.0067 Quality Trim Threshold: 14.5