EST details — SGN-E396553

Search information 
Request: 396553Match: SGN-E396553
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183996Clone name: TUS-43-K2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183996 is on microarray TOM1 spot ID 1-1-7.3.19.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2890 [cLEC-17-K12] Trace: SGN-T27173 EST: SGN-E203757 Direction: 5' Facility: TIGR
Clone: SGN-C183996 [TUS-43-K2] Trace: SGN-T197878 EST: SGN-E396552 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396553Length: 630 bp (858 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396553 [] (trimmed) CAAGGCTGGCAAAAGGGGCAATGGCCATCCTATTCTTCAAGGCTCTTCCCCTGCTTCTTCTTCTTTCTTTTACAGATTTATTTGCAAGCACACTC
AGCCTTGGAATTGGAATTAACTATGGCCAAATTGCAAACAATTTGCCAACACCCTCACGAGTCTCGTTTCTCCTCAGATCACTCAATGTTACGAG
AGTAAAACTCTATGACGCTGATCCAAACGTGTTAACCGCTTTCGCTAACACGAATGTTGAATTTGTTATCGGACTTGGGAATGAGTACCTACAAA
GAATGTCTGATCCTCAACAAGCTCAGGCTTGGATTCAACAACATGTTCAACCTTACCATACTCAGACTAAAATCACTTGTATTACTGTTGGTAAT
GAGGTCTTGACAGGTACTGATACGCAGCTGAAGTCTTACCTCCTACCAGCAATGCAGGGTGTGTACCGTGCTCTTGTTAATCTTGGACTTAGTAA
TGAAATATATGTGGCACATCCCCACTCGGCGGGGATCTTGGAGAACTCTTTTCCGCCTTCTTCTTGTTCATTTCGACAAGATCTTAGTGAATACA
TTCATGGCATGCTCAATTTCCATGTCCAAACTAAATCCCCGTTCCTTATAAATTTCTATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396553] SGN-U585972 Tomato 200607 Build 2 57 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197879 [Download][View] Facility Assigned ID: FA0AAD31BF01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5