EST details — SGN-E396564

Search information 
Request: 396564Match: SGN-E396564
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184012Clone name: TUS-43-K18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184012 is on microarray TOM1 spot ID 1-1-7.3.18.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3162 [cLEC-19-P12] Trace: SGN-T27551 EST: SGN-E202710 Direction: 5' Facility: TIGR
Clone: SGN-C184012 [TUS-43-K18] Trace: SGN-T197891 EST: SGN-E396565 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396564Length: 612 bp (893 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396564 [] (trimmed) AAATTGTAACTTACTTTTATACTTGATATCATAAATGTGCCTACATCAAACTTGTTTTTTCTACTATACACAAAAGGGGGGGAAAAAATAACAAA
TTCAACTGTTTGCTGTCCCTAAGTTTATGCCAACTATGACTGACTGAACTAAAACTTTTTCTTTCACCTATTATGACTAATTCCCTATGTAAATT
TGAAAATATACATGACAACATATTTCTGTTACAAACAATGTTTGTTGCTATATAAACTATATAACCACTCTCCAGGCAAACATCCTTTCTAACAA
GCCTAAAGCATCTAAAGGATTGTAATATTTCTTTCTTGATGAAAAAAGCCCAACTCCTCCTCCGCTCCTCGAGCTTGGAATATGTCAATCCTTCA
AGTTTTATGTACATTTCAAAAATTCATTCCCTGAAAAAAAATGCAGTCAAATCCAAGTGGTGGACACCAAAATATTGAACAAATATCTAACCTTG
CAAAAGTAATCGTGCTTGGGACATAAAAAACTCACAGTTGGAAAAAAAAAAAGTGTGAACGACCTTGAGGCACCATGAAGTCGATGGCATTTCTA
CTCGAGGTTGATCGTAAAAATTCATCAGGAATGCTCTTCAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396564] SGN-U574362 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197890 [Download][View] Facility Assigned ID: FA0AAD31BF09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.934 Expected Error Rate: 0.0106 Quality Trim Threshold: 14.5