EST details — SGN-E396684

Search information 
Request: 396684Match: SGN-E396684
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183877Clone name: TUS-43-F3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183877 is on microarray TOM1 spot ID 1-1-6.2.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4487 [cLEC-25-P11] Trace: SGN-T28761 EST: SGN-E205345 Direction: 5' Facility: TIGR
Clone: SGN-C183877 [TUS-43-F3] Trace: SGN-T198011 EST: SGN-E396685 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396684Length: 667 bp (887 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396684 [] (trimmed) AAAACTCAAAAATTCATTCAAACCGAGTAAAATTTGAATGCTCTACAAGATTAATGAGATCATGCTAAAGAAGCAGTTCCAAACTCTAACGTACA
AAATCAAGTTTTTCTAGTTACATCATATACTGACAAAATCATACTATAAAGGTCTTCGCGAAATAGTTGGCTTCGCGTTGACTAACTATTGAACT
ATATAACTATTCCTTTGTCGAAACTTAATGTATTTTGGAGAATCTGACACGGCTGCAGCATTAAAAGTAAAGAGTCAACGCAACTTAGTTTAATC
TGCTTTCAACCTTAACAGCTCCTTGGCAGTCCTCATCCTAAAATATGGCATGTCTCCCTGATTAAAACAGAGTCCTATATCTCTGCTGTAGAAAT
CCACATTTTTTATCATAAACACACCGCAGTCGTACCCATTCTTTTGCTCTGGAAGGTCCTCAACAAACTCTTCCATCCACGAACTAACATCAATG
TATTTCCCACTCTTGTCCTTTACCTCATCAACAAAAGTAAGTAGCCAGCACTTTCAGCACATTTCTATCCTTTCCTCTGAGTGAATCAAGATATT
GGAACTTCTGATCCTTTTTATTGATAACAGCTAAACACCAATGTATTTCTTTGTGGATAGGGAACAATATTTTATCGCACTCAAGGAAGGAGTAA
CC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396684] SGN-U567105 Tomato 200607 Build 2 10 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198010 [Download][View] Facility Assigned ID: FA0AAD31CC02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0017 Quality Trim Threshold: 14.5