EST details — SGN-E396841

Search information 
Request: 396841Match: SGN-E396841
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184298Clone name: TUS-44-G16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184298 is on microarray TOM1 spot ID 1-1-1.3.16.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C19323 [cLED-26-G15] Trace: SGN-T55250 EST: SGN-E241056 Direction: 5' Facility: TIGR
Clone: SGN-C184298 [TUS-44-G16] Trace: SGN-T198168 EST: SGN-E396842 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396841Length: 623 bp (869 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396841 [] (trimmed) ACGCTTATAATTACACTTTAATTATATAATGATAAACAAATATTGATAAACACTTGCCATTTCATACATGATACAACATTCTAATACACCAAAGT
AAAAAATATATAGTAATTTTTTTAAAAGCTCAATAGTAAAAAAAAAAATCATCATGTGAAATTCATCTTTGATAAATTTTAACCAAATTTATCAA
GCTATAAATCCTTTTATTTTTTTGAAATTTTTTAATTGAAATGTGGTTGTTGATCAAGCCATGGCCAGAATCCAGATGAATTGTCATCAATTCCA
CAGAAGATGTTGGATAAAGTTTCTTCTTTGACAGTTTGGTCCATTAATTTCATATTATTGCATTGCAGCTTCATAATTTCAGTGCTATTTTCACT
TCTAGTACTACAAATTGAACCTTGATCTGTCTCCTTGTTCAAATTGATTGATTCTGTTGGCCCCTTTCCATTTTTCAGTGTCATTATCTCTGCTT
GAAGCTTGTTGTTATGAGCTAGGAGAGCCTCATTTTGTGACTTGATAACATCAAACTCCCTCTTGAGAACATCATAATGCTTCTCCAATTGCTTT
GTTTTCCATCTTGCCCTCCTATTTTGGAACCAAATGGCAACTTGCCTTGGCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396841] SGN-U574960 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198167 [Download][View] Facility Assigned ID: FA0AAD32BD08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.913 Expected Error Rate: 0.0006 Quality Trim Threshold: 12.5