EST details — SGN-E396894

Search information 
Request: 396894Match: SGN-E396894
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184448Clone name: TUS-44-M22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184448 is on microarray TOM1 spot ID 1-1-3.1.16.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C22064 [cLED-36-E9] Trace: SGN-T57753 EST: SGN-E241583 Direction: 5' Facility: TIGR
Clone: SGN-C184448 [TUS-44-M22] Trace: SGN-T198221 EST: SGN-E396895 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396894Length: 318 bp (883 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396894 [] (trimmed) AGTGGAAAAATTCTATTGTGGGTCTGGGTGGCAAGTTCATTCTACTTCAAACCCATTTTGTGTAATAAGGTTTGATCGGATACCCAGTTTAAAAA
ATTAAATAAAAAATTTGACATGTAACATTTAATGAAATAACAACCCATAAAGGACTATATAAAAGTCAATTCCATATAATGATTGACTAAAATAT
GGTCAGTACCCAATTGGACACATTCCTAAAAAATGAACTGTTCCTAATTTCATGAGTTTTGAACCACAACCCCCTTGTAAAAAAACTTGCTCTGT
CCCAATTTAGGTGAAACCCTCACTCCGTATAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396894] SGN-U594841 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198220 [Download][View] Facility Assigned ID: FA0AAD32BG11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.885 Expected Error Rate: 0.0192 Quality Trim Threshold: 14.5