EST details — SGN-E397041

Search information 
Request: 397041Match: SGN-E397041
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184220Clone name: TUS-44-D10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184220 is on microarray TOM1 spot ID 1-1-7.4.16.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72632 [cLER-20-M10] Trace: SGN-T96908 EST: SGN-E285336 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E397041Length: 666 bp (872 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E397041 [] (trimmed) CTCAACTATGATGGTACTATGTTACCAGAGGATAAAGTGGACAAAGCCCCAAGTCAAGAAGTCATCTCAGTTCTGAATGGTTTATGCAGTGATCC
AAAGAACATCGTGTTTATCGTGAGCGGCAGGGGAAGGGATACGCTCAGCAAGTGGTTTTCTCCGTGTGCAGAACTTGGCTTATCAGCAGAGCATG
GTTACTTCACTAGGTGGAGGAAGGATTCCGATTGGGAATCTCGTCTGGTACCTGCAGACACTGAGTGGAAAAAAGTGGTCTTGCCTATTATGAAG
AAATACACCGAGGCAACAGATGGTTCTTCGATAGAGCAGAAGGAAAGTGCACTAGTGTGGCATCATCTTGAAGCTGATCCTGACTTTGGCATTTG
GCAGGCTAAAGAGCTTCTTGATCATCTCGAGAGTGTGCTCGCTAACGAGCCTGTGGTTGTTAAACGAGGCCAGCACATTGTTGAGGTGAAACCAC
AGGATGTAAGCAAAGGTCTGGTGTTTCAAAGCCTCTTGGCATCGATGAAAAGCAAAGGGAAGTCACCCGATTTCGTGTTGTGCATAGGTGATGAC
AGATCAGATGAAGACATGTTTGAGAGCATTGCAAGTTCTTTAGACAACAGTTCTCTGCCTGATAATGCAGAAGTCTTTTCCTGCACCGTCGGGCA
A
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397041] SGN-U576716 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198367 [Download][View] Facility Assigned ID: FA0AAD32DB05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0077 Quality Trim Threshold: 14.5