EST details — SGN-E397583

Search information 
Request: 397583Match: SGN-E397583
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185017Clone name: TUS-46-E15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185017 is on microarray TOM1 spot ID 1-1-2.1.12.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3402 [cLEC-20-H18] Trace: SGN-T27846 EST: SGN-E206064 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E397583Length: 620 bp (874 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397583 [] (trimmed) ACCCTTATAATTACACTTTAATTATATAATGATAAACAAATATTGATAAACACTTGCCATTTCATACATGATACAACATTCTAATACACCAAAGT
AAAAAATATATACTAATTTTTTTAAAAGCTCAATAGTAAAAAAAAAAATCATCATGTGAAATTCATCTTTGATAAATTTTAACCAAATTTATCAA
GCTATAAATCCTTTTATTTTTTTGAAATTTTTTAATTGAAATGTGGTTGTTGATCAAGCCATGGCCAGAATCCAGATGAATTGTCATCAATTCCA
CAGAAGATGTTGGATAAAGTTTCTTCTTTGACAGTTTGGTCCATTAATTTCATATTATGGCATTGCAGCTTCATAATTTCAGTGCTATTTTCACT
TCTAGTACTACAAATTGAACCTTGATCTGTCTCCTTGTTCAAATTGATTGATTCTGTTGGCCCCTTTCCATTTTTCAGTGTCATTATCTCTGCTT
GAAGCTTGTTGTTATGAGCTAGGAGAGCCTCATTTTGTGACTTGATAACATCAAACTCCCTCTTGAGAAAATCATAATGCTTCTCCAATTGCTTT
GTTTTCCATCTTGCCCTCCTAATTTTGGAACCAAATGGCAACTTGCCTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397583] SGN-U574960 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198909 [Download][View] Facility Assigned ID: FA0AAD34AC08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.912 Expected Error Rate: 0.0082 Quality Trim Threshold: 12.5