EST details — SGN-E397616

Search information 
Request: 397616Match: SGN-E397616
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185151Clone name: TUS-46-K5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185151 is on microarray TOM1 spot ID 1-1-4.3.12.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23480 [cLED-5-I12] Trace: SGN-T49627 EST: SGN-E231011 Direction: 5' Facility: TIGR
Clone: SGN-C185151 [TUS-46-K5] Trace: SGN-T198943 EST: SGN-E397617 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397616Length: 484 bp (874 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397616 [] (trimmed) ATATTTATAATGGATTTAAACCAACTTATGAAAGAAAGGAACGATATTAATCAATTGGATGGGTCGCCTCTGTTCAACATTTGTTTGTACCTAAA
AATAAAATGAAGCCTCTGTAACTTCAATTGTTGCCTAAACTTATTAATAAAATCATCAGCTTTCTTATCAACTGCTTCATCATCCCTCACTGTTT
CCCTCGTCGTTGCCGGTCGGCGCAAATCCACCTCCGGCATCTTCTTCTCACTTGCCGATTTCACCAATATCGTCCTCGTTTGTACTTTCTCCTCC
GTGCACGTTGCAGATTTACTTCTTGTCACGTGACTCACTTCTATCTGCGGTTCAATTTCATCATCGTATAGGGGAATTTGGTCGGGTCGTGAGAA
AGACAAGTTGATGGACTTGACCCGTTGTAGCAAAGACGAAGTAAGGTCGAGTGGTGAGTTATGGGAGGGAAATGGATCAGGAAAACACAAATTAA
AGGACTTGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397616] SGN-U582356 Tomato 200607 Build 2 5 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198942 [Download][View] Facility Assigned ID: FA0AAD34AF03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.973 Expected Error Rate: 0.0095 Quality Trim Threshold: 14.5