EST details — SGN-E397780

Search information 
Request: 397780Match: SGN-E397780
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185175Clone name: TUS-46-L5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185175 is on microarray TOM1 spot ID 1-1-4.4.12.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70713 [cLER-15-K24] Trace: SGN-T95350 EST: SGN-E282830 Direction: 5' Facility: TIGR
Clone: SGN-C185175 [TUS-46-L5] Trace: SGN-T199049 EST: SGN-E397723 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397780Length: 601 bp (871 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397780 [] (trimmed) CAAGAAACTTTCTTGAGCCTCTAAATTAATAAAAATGTAAATTAACAACTTGTAAAACAAACACAACAAAATGAAAACTTCCCAAATCTACACCT
TATTTTAATTATATGATTCAAAGTAAGTGTAGATCATTAATCTATGTTGCTGATGTCCAAACAATATCCTTAAGTGCTGGTCTTACCTCTTTGCT
GCAGAATTGATTATACTCCAATGTATCACCACTTGCTTTATTCACTTCCACAACTACAAATGAATTTGTCACAGCAAATATATCAGCAGCAATTC
CTAATTTCCCTTTTCTCCCCACCACTTGTCCTTGTAGTTTTACACAGGAATCACTCTTTTTTACGATGAAATTCGTTGTCTTTGCTACCTCCTCA
AGCTTAGATATCACACTACTTGCTGACATTGTAGTCGCGAATCTCATCTGTTCTTTCTCATTCCTTTTATTCTCTTCGAACAATGGTGACAAATC
AAACCCTTCAGATAAAGAAATGATATGAAACGCGTTCATTGTCTCACCTTGTTTACAAAACTTATCCTGATGCAAATGCAAATGCAAAATTCTTC
CCTCATCTTTGTTCCTTAACGTCTTTGGGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397780] SGN-U583600 Tomato 200607 Build 2 13 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199106 [Download][View] Facility Assigned ID: FA0AAD34CF03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.940 Expected Error Rate: 0.0152 Quality Trim Threshold: 14.5