EST details — SGN-E397789

Search information 
Request: 397789Match: SGN-E397789
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185239Clone name: TUS-46-N21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185239 is on microarray TOM1 spot ID 1-1-4.2.11.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C76601 [cLES-18-I23] Trace: SGN-T101668 EST: SGN-E289226 Direction: 5' Facility: TIGR
Clone: SGN-C185239 [TUS-46-N21] Trace: SGN-T200104 EST: SGN-E398778 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397789Length: 630 bp (854 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397789 [] (trimmed) AAAAAACACTTGCATATTATATCTATAATTGACATCACATACTCTAATACTACAGTCACGCTACAAAACTACATATCATAAACTCCACCATAGTT
AACGCATTCAAGCCACCTCTCATACAAGGTTTATTCATCTGACCGTAAACTAGGGTTGTTTGTATTTTCCTTGCAAACTTACCATTGTTTTAACA
TAATCACCCCATACAAAGTTGATCACCAAATATAGTACTACCATTAGGTTGCTGGTCTCAGATAAAGAGGTAAGTAGTGTTTAGGATCTGGATCT
GAACTCCACACTGAGAATGCACTTGTGCATCTCATGTATTTCTCTGTCATTTCAGGGAAGTATCGATCGATGACATCTTTCAATGTCTCTGTCTT
GTTTACCCATTCAAAGCCTTTCTCTGTGTAGGTTCGCGAATTGAAATCAGTTGTGAAGAATCGATCAGCCTCTAACCTCCTTGAAGCAATGAGCA
GAAATATAAAAAAGGCAGTCTCACTAATGGCAAAGCCTTTAATTTTCTTCTCCGCGTGCAAACCAATTTGGAGATCTAGCTTCTCAATATCATCG
CCATATACTTCTTGTAAAGCCTCAATTACTTCTTCGTCGTTAGTTAAATCCTCCCACTTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397789] SGN-U569126 Tomato 200607 Build 2 27 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199115 [Download][View] Facility Assigned ID: FA0AAD34CG11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.964 Expected Error Rate: 0.0080 Quality Trim Threshold: 12.5