EST details — SGN-E397821

Search information 
Request: 397821Match: SGN-E397821
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176818Clone name: TUS-24-O24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176818 is on microarray TOM1 spot ID 1-1-1.3.9.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27948 [cLEF-46-B3] Trace: SGN-T61716 EST: SGN-E247305 Direction: 5' Facility: TIGR
Clone: SGN-C176818 [TUS-24-O24] Trace: SGN-T193115 EST: SGN-E391789 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397821Length: 621 bp (838 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397821 [] (trimmed) AGGTACAAAATATTTCAAATTATATGCAAATTGAGAGTAACAATATCACAACTTTACAACATATATACTATAGCTAGTTTAAATTTCCACATTAA
CTTAAATAGTACTCCAAGCAAGCTATTTCAACCCCCCAAAAATAAAAATACTACTAGTTGTATCAATCTTCTCAAGGAAGTAGAAGTATAACCTA
TACTAAGTAGACTCTATCTATACACTAAAGCACAAAATCTCTTCTTTTCTATACTATAATTAAAAAAAGAAGTATATATACTAGAAAGTGTGCTT
TAAACTTTTGTCTCCTATGATAGGTTGTATCAAATTGGGTCCTCCGACTTGGGCCAGAAGGCCTCACACAATATAAGAGTATCCCTAACTTCCTT
TTTTATGTTTTCAGCTATCAATACGAGACTTTGTGGTATTCATGTTCCAAGATTACCTGTAACAAAATCTGGCAATAGTTGAGTTGGAAATCGCT
TATTCCCACTTTGAAAATCAATGTTTTCATATCCCATTCTATTGTAATGACTTCCTATTTCAGGCCTACTTCCCAACTCATTAGAAAGATAATTT
TGTTGGCTCACTGGCATGGCTAGGTTTTCAGAAGGAGGAAGTCCTAAAGTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397821] SGN-U578683 Tomato 200607 Build 2 61 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199147 [Download][View] Facility Assigned ID: FA0AAD12BH12FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.941 Expected Error Rate: 0.0008 Quality Trim Threshold: 14.5