EST details — SGN-E398170

Search information 
Request: 398170Match: SGN-E398170
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183108Clone name: TUS-41-F2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183108 is on microarray TOM1 spot ID 1-1-7.2.3.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C118743 [cTOB-14-B23] Trace: SGN-T132219 EST: SGN-E319030 Direction: 5' Facility: TIGR
Clone: SGN-C183108 [TUS-41-F2] Trace: SGN-T199497 EST: SGN-E398171 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E398170Length: 653 bp (866 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398170 [] (trimmed) CTGTATATAAATGTGATATTTTGATCTTCGGAGTTCCTGCTTGGTCAAGTGTACGTATTCCATAGTTCTTGCATTACATCGATATTATTGGAACT
TCTGCTCTACTATCTACAACTGAATTTCTAATATCAACAGAGGTTTCTTCGTCTTCATTCCTAAAAAAGGAAGATGACATGCTAGGAACAATCTG
ATCTCCATAACGTCGTAAAGCAGTAATTGTAGGATTATTGTTCCTGACCGGTACATTATTAGCTTCCATTTCTATCTGCATAGCCTGAGGAAAAG
CTATTGGGACAAACTCATCAGTGGAGTCTCCATGTCCTTCCTCCATTCCATTCTCAATAGCAGATCTTGCAGCTGCTTCAAGCTGCCACATTTGT
GACAACGCTTCTTCTAGTCGTTCTTTTGCTGCAACGATTTCAACGATAGGAAAAGGATAATTGGAACCAAGCTCAATTCCAGCAGCTTGAAGTAC
AGATTCTGGTGCATCCCATGGGTGGTGTATCCATTCTGTGGGCAGCCTAGCAAGTTCAGGAAGCCATCGTCGAACATATTCCCCCATTTGGATCA
AACTTGTATCCCTCAAACTGTGGATTATCAATTCCAAGGAACTCACAACCATCAGGTAGGGTACCGGTAAATAAAATTGCCAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398170] SGN-U565412 Tomato 200607 Build 2 14 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199496 [Download][View] Facility Assigned ID: FA0AAD29DC01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0107 Quality Trim Threshold: 12.5