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EST details — SGN-E398271

Search information 
Request: 398271Match: SGN-E398271
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172688Clone name: TUS-14-C22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172688 is on microarray TOM1 spot ID 1-1-3.3.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10805 [cLEC-6-F14] Trace: SGN-T24213 EST: SGN-E202552 Direction: 5' Facility: TIGR
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T1260 EST: SGN-E378336 Direction: 5' Facility: Giov. Lab
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T195216 EST: SGN-E393890 Direction: 3' Facility: INRA
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T195368 EST: SGN-E394042 Direction: 5' Facility: INRA
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T195659 EST: SGN-E394333 Direction: 3' Facility: INRA
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T195659 EST: SGN-E399033 Direction: 3' Facility: INRA
Clone: SGN-C172688 [TUS-14-C22] Trace: SGN-T199597 EST: SGN-E399034 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398271Length: 393 bp (865 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398271 [] (trimmed) ACTAGTTCTCCAAGGCGAAGAGAAACAGTTCTCTGCTGAAGAAATCTCCTCTATGGTTCTTATTAAGATGAAGGAGATAGCTGAGGCTTTTCTTG
GAACAACAATAAAGAATGCTGTTGTTACTGTGCCTGCGTATTTCAATGACTCTCAACGTCAGGCTACTAAGGATGCTGGAACTATTTCTGGGCTC
AATGTTATGCGTATTATCAACGAGCCTACTGCTGCTGCAATTGCATATGGACTTGATAAGAAATCAAGTAGTACAGGGGAGAAAACTGTGCTTAT
TTTTGACTTGGGTGGTGGTACGTTTGATGTCTCACTACTTACTATTGAGGAAGGTATTTTTGAAGTGAAAGCTACTGCTGGTGATACTCATCTTG
ATGGAGAAGATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398271] SGN-U579872 Tomato 200607 Build 2 71 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199597 [Download][View] Facility Assigned ID: FA0AAD2BB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0011 Quality Trim Threshold: 14.5