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EST details — SGN-E398278

Search information 
Request: 398278Match: SGN-E398278
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172958Clone name: TUS-14-O4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172958 is on microarray TOM1 spot ID 1-1-5.3.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14365 [cLEC-7-K9] Trace: SGN-T25393 EST: SGN-E202111 Direction: 5' Facility: TIGR
Clone: SGN-C172958 [TUS-14-O4] Trace: SGN-T200224 EST: SGN-E399099 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398278Length: 547 bp (840 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398278 [] (trimmed) AGCACACATGATGCATTGCATCATTTTTATTACACATGAAACTTTATTACAAAATTTATGTCTTTTACACACACAAAAAAATCAAATTGAAATAC
TATAAGGTACACCTTTTCCAGTAACTCCAGGTTCAGAATAAGGTTTCAACAATTCATAAGGCATAACTCCAGCTCCATTTCTATTATTCAACTTA
CTATCATTATTTCTAGCATCAATAATCCCTTCAAGCTCTTTCAATTTCCCCGAAAACACCTCGAACGCCGCGTTAATCACGGGATCCTCAGCCCA
ATAAGGCTCAATCTTTTCACCAATATATTCTTCATCTGGTGAATGGTTTGATAAGACATCCAAAATTGTCATCACTTTTGTTGCTTGAATTTGTG
AAGGGAAGCATCTTAGTAGTGCCTCCTCAGGTTTATTCAAGAACCACTCCCATTCCTCAGCTGTTGGATCCTCAGTTGGCATTTTTGACCTAACA
GTTGTTGGCCTATTTGGAAAGTAGCCTCCATAGCTATATTGGCCAAAGTTAACAGCTGCATGATGGCCAGAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398278] SGN-U572041 Tomato 200607 Build 2 88 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199604 [Download][View] Facility Assigned ID: FA0AAD2BH02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5