EST details — SGN-E398293
| Search information |
| Request: 398293 | Match: SGN-E398293 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172968 | Clone name: TUS-14-O14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172968 is on microarray TOM1 spot ID 1-1-3.3.20.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14385 [cLEC-7-L8] | Trace: SGN-T25502 | EST: SGN-E202220 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172968 [TUS-14-O14] | Trace: SGN-T1266 | EST: SGN-E378242 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C172968 [TUS-14-O14] | Trace: SGN-T195261 | EST: SGN-E393935 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172968 [TUS-14-O14] | Trace: SGN-T195262 | EST: SGN-E393936 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172968 [TUS-14-O14] | Trace: SGN-T195411 | EST: SGN-E394085 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172968 [TUS-14-O14] | Trace: SGN-T199619 | EST: SGN-E399105 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398293 | Length: 620 bp (851 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398293 [] (trimmed)
AACAAAACTTTGGATCTCCAGCTGCACCAGTTCAGGAACGACCAATTCAGAGATCATGGGTTCCTCCCCAGCCTCCTCCAGTCGCAATGGCAGAG
GCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCA
GAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAG
GTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTAC
ACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAA
ACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGG
TGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCCTATTGTTCAAA
GCAGCTGCAGCCATCCGCCAACCTAAAAAGTCTGCATCTCAGAACGAACAGTTGACTGATGATCAGTTGTTAGCTCGTTCATCAGATGAGTTGCA
GAGGGTTACAAGAATCTCCGAATCTGGTGGTGCCCCTGAAGCTAATGGTTCGAGTTCTGGCCTACAGATGAGTGAAACAACACCAATTGAAGAAG
GTGATCAAACTTTCAGCAGCTGAAATATCATTTAATTTCCTTGATATAAAACGCTGGGCATTCACTATTGAGGTTCATCACGATCTTACAGCTAC
ACGTTCTTGATAAATCGAGCCTCATTTCGTGTTTACCCCCAAGTTACATTTATCAACTTTTTGGTATATGGTTGTCTATTCATTACACACTCTAA
ACTGGCTGCAGACTTAAGAATTGTATTTATATAATTCTACAGTTTGAATAAAGGTTAGATTATGTGAATAACATAATTCATGTTCAGTAATTTGG
TGGATACAAAAAGTATTCTAATAAATCAAAGTGTGGCCCTATTGTTCAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398293] | SGN-U575659 | Tomato 200607 | Build 2 | 56 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199619 [Download][View] | Facility Assigned ID: FA0AAD2BH07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0084 | Quality Trim Threshold: 12.5 |
Working
