EST details — SGN-E398316

Search information 
Request: 398316Match: SGN-E398316
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183475Clone name: TUS-42-E9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183475 is on microarray TOM1 spot ID 1-1-8.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183475 [TUS-42-E9] Trace: SGN-T199642 EST: SGN-E399140 Direction: 5' Facility: INRA
Clone: SGN-C183475 [TUS-42-E9] Trace: SGN-T200448 EST: SGN-E399555 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398316Length: 662 bp (873 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398316 [] (trimmed) AATCTATTCAAACATTATTTTTATTAAAATAATATGATATATTATAAAACGATATACAATAACTATATATAGCATTCTTTTGATAATATTTTCAA
AGAGTTGCGTTTTTTGACCGTAACAACTATATCCAGATAAGTTATACGTTACCTATTGTATGTGATAATGGGAAAACAATGTTATGTATCGAAAC
ATTATATATATTAAAACGATATATTATGAAATAATATGTAATAACTATCCAGTAAGTCGTCAAACCTTTTTTGGAATCACTTTCAAAGAGTCGCG
TTTTCTAGCTGTTACTCCCATGCTTTCATCCATATTAATAGATTTAGGAGACACACCATCTGGAAGCTCCCAATCGAATTCATGAAGCAACGATC
CAAGAGCGAAATGCATCATTCGATGGCCTAAAGGCAAACCAACACACATTCTTCGTCCTGCACCAAATGGAATTAGCTCAGAGGGCTGACCCTTC
ACGTCCAATTTCGAGCCAAGAAACCTCTCGGGCTTGAAACTCATAGGGTCGTCCCAACATTCAGGATCTCTTCCAATTGCCCAGGCATTTACGAG
GACTCGAGTCCCTTTTAGCACGTCGTACCCCATGAACTTAGTGTCTTGAATTGTCTCTCTTGGGATCAAAAAAGGGAAAAGGAGGAAGTAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398316] SGN-U580161 Tomato 200607 Build 2 41 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199642 [Download][View] Facility Assigned ID: FA0AAD30AC05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.952 Expected Error Rate: 0.0145 Quality Trim Threshold: 12.5