EST details — SGN-E398323
| Search information |
| Request: 398323 | Match: SGN-E398323 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183588 | Clone name: TUS-42-J2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183588 is on microarray TOM1 spot ID 1-1-7.2.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183588 [TUS-42-J2] | Trace: SGN-T194988 | EST: SGN-E393662 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183588 [TUS-42-J2] | Trace: SGN-T194988 | EST: SGN-E399471 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183588 [TUS-42-J2] | Trace: SGN-T194989 | EST: SGN-E393663 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183588 [TUS-42-J2] | Trace: SGN-T195534 | EST: SGN-E394208 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183588 [TUS-42-J2] | Trace: SGN-T199649 | EST: SGN-E399472 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398323 | Length: 635 bp (827 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398323 [] (trimmed)
CTCAAAGACTAATAGAAAGTGAACTTCAACATACTCTCTAAGCTCATCATAAGTTCAAATTTCTTACAAATCCCAAAACAAACAATTCAAATACA
CAAAATAAGGTACTAATTTAAGCAACATACAGTCATTAGAGATTACTTGATAGGTTGTAGACATTAAAAGTTCTTTTGTAAAATTCTCAAACCTC
TTGCTGGGGATTTTATTCTACTGAAGTTCAAGGGACTTCTTGTCATGATGAGGAGGAGGCAATGGATCATAGGAAGAGACTCCTTGGCCTTCCAT
CATATTAAGTTGAAGCATATTTCTTGCTAAATATTGCTGTATTGCACTGTAATCTTGTCCTCCTGCTGCTGGCATCATGCTTAGTTCCTGAAGCC
TCTCATTTTCTGCTATCTTTGATCTAAGGAATGCATTCTCCTGTTCCAGTAGAATTTCCCTCTTCTGCAAATTCTCAGTTTCAGCCAGTATCATC
TCATGCTTTTTTGATCTGATTCTGCTGATGCCTCGTTCAAGTCTATTTTCCAACTGCTTCAGCTCTCTTACGTTCAAACAACTTAATCCTTCACC
AACCAGATGCCTGTTTGAATTCTGCATCATTTGTATCTGTTGGCGCAACTTTTTTTGATTCTTGT
CAAAATAAGGTACTAATTTAAGCAACATACAGTCATTAGAGATTACTTGATAGGTTGTAGACATTAAAAGTTCTTTTGTAAAATTCTCAAACCTC
TTGCTGGGGATTTTATTCTACTGAAGTTCAAGGGACTTCTTGTCATGATGAGGAGGAGGCAATGGATCATAGGAAGAGACTCCTTGGCCTTCCAT
CATATTAAGTTGAAGCATATTTCTTGCTAAATATTGCTGTATTGCACTGTAATCTTGTCCTCCTGCTGCTGGCATCATGCTTAGTTCCTGAAGCC
TCTCATTTTCTGCTATCTTTGATCTAAGGAATGCATTCTCCTGTTCCAGTAGAATTTCCCTCTTCTGCAAATTCTCAGTTTCAGCCAGTATCATC
TCATGCTTTTTTGATCTGATTCTGCTGATGCCTCGTTCAAGTCTATTTTCCAACTGCTTCAGCTCTCTTACGTTCAAACAACTTAATCCTTCACC
AACCAGATGCCTGTTTGAATTCTGCATCATTTGTATCTGTTGGCGCAACTTTTTTTGATTCTTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398323] | SGN-U585391 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199649 [Download][View] | Facility Assigned ID: FA0AAD30DE01RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.939 | Expected Error Rate: 0.0072 | Quality Trim Threshold: 14.5 |
Working
