EST details — SGN-E398336

Search information 
Request: 398336Match: SGN-E398336
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183409Clone name: TUS-42-B15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183409 is on microarray TOM1 spot ID 1-1-2.2.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C26231 [cLEF-3-H19] Trace: SGN-T59373 EST: SGN-E244392 Direction: 5' Facility: TIGR
Clone: SGN-C183409 [TUS-42-B15] Trace: SGN-T196065 EST: SGN-E394739 Direction: 3' Facility: INRA
Clone: SGN-C183409 [TUS-42-B15] Trace: SGN-T196065 EST: SGN-E399339 Direction: 3' Facility: INRA
Clone: SGN-C183409 [TUS-42-B15] Trace: SGN-T200468 EST: SGN-E399588 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398336Length: 449 bp (830 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398336 [] (trimmed) CAAGTGAAGCACCACAGCCATCTCGAGAAGATTGGTGAACTTGGTGCTGTTGCTGCTGGTGCTTTGGCCTTACATGAGAAACACAAGGCAAAGAA
GGACCCAGAGCATGCACACAAGCACAAGATAGAGGAAGAGATTGCAGCTGTTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAACATCATC
AGAAAAAAGATGCCAAGAAAGAAAAAAAGGAAGTTGAGGGTGGACACCACCACCACCACCACTACTAATCAAATTTAACTTTTTTAGGCACCTAT
GGACTCTATGTTTTGTCTAATATAAATAAATAAAAGATACTACTATATATGTGTTTTGTATCCAATATTAATCTCTCTCTAGATTGTATGATTTG
GTGTTTCTATGTTAATCTCACTATGTAATACTTTGAGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398336] SGN-U577499 Tomato 200607 Build 2 14 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199662 [Download][View] Facility Assigned ID: FA0AAD30CA08RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.953 Expected Error Rate: 0.0016 Quality Trim Threshold: 12.5