EST details — SGN-E398356

Search information 
Request: 398356Match: SGN-E398356
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183493Clone name: TUS-42-F3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183493 is on microarray TOM1 spot ID 1-1-6.2.2.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C34188 [cLEG-30-A5] Trace: SGN-T69002 EST: SGN-E255276 Direction: 5' Facility: TIGR
Clone: SGN-C183493 [TUS-42-F3] Trace: SGN-T199682 EST: SGN-E399591 Direction: 3' Facility: INRA
Clone: SGN-C183493 [TUS-42-F3] Trace: SGN-T200347 EST: SGN-E399358 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398356Length: 328 bp (876 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398356 [] (trimmed) GGGGAAAATGCTGGCATTCCTTAAGAACTGTTTGCATAAAATCTTATCCCTTATCCTGTTATACATCACATGTGAACGTAACATAAAATTTCCTC
TGAAGGTAACTTCCATTTTAAAAATCCAACAAATGTAATGAAATGTGATCCCTGTAACTCTTTTCCCCGCACTGCAGGTGAATTCCAAAAAAAAA
ATGTTCTAACATCATTGGAAAAAAATGTCTTCTGACTCCAGCAGCCAAAAACAGCAAAATTTAAAAAAGTGAAAAAAAAGGAAGCCTCCCTGCCT
CCACACTAAATTCAAGCTCAAATCTTTTTTTTTTTTTTTTCCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398356] SGN-U590792 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199682 [Download][View] Facility Assigned ID: FA0AAD30CC02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.895 Expected Error Rate: 0.0269 Quality Trim Threshold: 14.5