EST details — SGN-E398393

Search information 
Request: 398393Match: SGN-E398393
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181007Clone name: TUS-35-N13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181007 is on microarray TOM1 spot ID 1-1-4.2.17.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C66685 [cLEN-15-C13] Trace: SGN-T90464 EST: SGN-E274229 Direction: 5' Facility: TIGR
Clone: SGN-C181007 [TUS-35-N13] Trace: SGN-T197729 EST: SGN-E396403 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398393Length: 595 bp (839 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398393 [] (trimmed) GTGGTGTACAACTTTTACCAATTTCATGCAAGAGTTGCAATAATTTCAAAATTACAATAGAAGCTATCGAAGAGGCCTATGAAAAAGGTCAACAA
GCAAATGTCAAAATCAAAGGCTTGATTTTGACCAACCCTTGTAATCCATTAGGTACCATTTTAGATAGGGACACACTTAAAAAAATCTCCACCTT
CACTAACGAACATAATATCCATCTTGTTTGCGACGAAATATATGCTGCTACCGTGTTCAATTCTCCAAAATTCGTTAGCATCGCTGAAATTATCA
ACGAAGATAATTGTATCAATAAAGATTTAGTACACATTGTGTCTAGTCTTTCCAAGGACTTAGGTTTTCCAGGATTTCGAGTGGGAATTGTGTAC
TCATTCAACGATGATGTTGTTAACTGTGCTAGAAAAATGTCGAGTTTTGGTCTTGTTTCGACTCAGACACAACATTTGCTAGCTTTCATGTTGTC
TGACGATGAATTTGTGGAAGAATTTCTTATTGAAAGCGCGAAAAGGTTGAGAGAAAGGTACGAGAAATTCACTAGAGGACTTGAAGAAATAGGAA
TCAAGTGCTTAGAAAGCAATGCAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398393] SGN-U583839 Tomato 200607 Build 2 27 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199719 [Download][View] Facility Assigned ID: FA0AAD23CG07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0073 Quality Trim Threshold: 14.5