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EST details — SGN-E398542

Search information 
Request: 398542Match: SGN-E398542
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174284Clone name: TUS-18-F10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174284 is on microarray TOM1 spot ID 1-1-7.2.16.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7824 [cLEC-40-G15] Trace: SGN-T32109 EST: SGN-E210045 Direction: 5' Facility: TIGR
Clone: SGN-C174284 [TUS-18-F10] Trace: SGN-T197326 EST: SGN-E396000 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398542Length: 573 bp (836 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398542 [] (trimmed) AAGGGAAGAATATGATTATTGTCTTATTCAAATGTTCTACCAATGCATATAATACATATATATATATATATAGAAATATATTAAGAAAAAGTTAC
ATCACACAAACTTGAGGTTGTAATTGAATAAAAGAAAAAAATGAAACTTGACGATGTAGATTTAAATGAAAGTACTATATTGACACACTATTAGG
TATTCCTTTGCCTGTGAGTCCCTGTTCACTTGTAGGGAAGAGCAATGTATATGGAACTTTAACAGGCCCTGACCTATTTTTCCATTGCTCATCAC
CATTCATCTGTATAATTTGATCCTCGATCTCACTTAACTTCTTCCCAAATCTCTCAAAAGCAGCAATGGATTCTTGATCCTTTGTCCATTCGGAT
GAGTCCCGTTGTCCAAGGTAAATCTCATCTGATGCATGCCTTGATAATATTTCTATGAGAGAAATTCCTAGTAATGTCTGTAGTTGAGGAGTGAT
TGTTTTCAAGTATGCCTTGTCAGGATTTGTCTTGAGTTCTTCATACTCAGGAGTTCCTGGCTCAGGCATGAATCTTCGACTTAATGTTGGGCGAT
TTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398542] SGN-U580560 Tomato 200607 Build 2 52 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199868 [Download][View] Facility Assigned ID: FA0AAD6DC05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.942 Expected Error Rate: 0.0010 Quality Trim Threshold: 14.5