EST details — SGN-E398597

Search information 
Request: 398597Match: SGN-E398597
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183934Clone name: TUS-43-H12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183934 is on microarray TOM1 spot ID 1-1-5.4.19.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7715 [cLEC-39-P4] Trace: SGN-T31884 EST: SGN-E208594 Direction: 5' Facility: TIGR
Clone: SGN-C183934 [TUS-43-H12] Trace: SGN-T1794 EST: SGN-E378221 Direction: 5' Facility: Giov. Lab
Clone: SGN-C183934 [TUS-43-H12] Trace: SGN-T198108 EST: SGN-E396782 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398597Length: 626 bp (888 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398597 [] (trimmed) ATCAGAGTTCACAAATAATTATGACAACAATAATAGGATTAATCCTCAATTATTAGGAGGAGTTAATTCATCAGTTTCTTCATTTTCTAACACAA
GTAGTGTTAAAAGGGAAAGAGATCATGCTAGTAGTTTTGATGAAGAAGTAGAAAATTTGGAGACTAAAAAAGTTTTAATTATTTCTCCAAAGGGA
TTAGTTGATCATAATGATGATGATGATTATGGTACCAGGAAGAAACTTAGACTTACTAAGGAGCAATCTGATGTTTTAGAAGATAGCTTCAAAGA
GCATACTACTCTTAATTCTAAGCAAAAGAGAGATTTAGCAAGACGATTAAGCTTACGTCCTCGACAAGTGGAAGTATGGTTTCAAAATCGAAGAG
CCAGGACAAAGCTGAAACAAACAGAAGTGGATTGTGAAATTCTTCGAAAATGTTACGAAGACTTAAAAGACGAAAACAGAAGGCTAAATAAGGAA
ATACAAGACTTGAAATCTTTGAAAAAATCACAACCCTTTCGTGTTCAATTATCGGCTGCGACACTTAGTATGTGCCCGTCGTGCGAGAGGACTTA
CGGCGGCGCCGCCACCGACAATTTCACCAAAATTTCTTTTTCCATCGGAGATCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398597] SGN-U570501 Tomato 200607 Build 2 16 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199923 [Download][View] Facility Assigned ID: FA0AAD31DD06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.955 Expected Error Rate: 0.0030 Quality Trim Threshold: 14.5