EST details — SGN-E398828
| Search information |
| Request: 398828 | Match: SGN-E398828 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182522 | Clone name: TUS-39-M16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182522 is on microarray TOM1 spot ID 1-1-1.1.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C45907 [cLEG-9-L5] | Trace: SGN-T65549 | EST: SGN-E251466 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182522 [TUS-39-M16] | Trace: SGN-T194904 | EST: SGN-E393578 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182522 [TUS-39-M16] | Trace: SGN-T194904 | EST: SGN-E398827 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182522 [TUS-39-M16] | Trace: SGN-T195267 | EST: SGN-E393941 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182522 [TUS-39-M16] | Trace: SGN-T195268 | EST: SGN-E393942 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398828 | Length: 718 bp (872 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398828 [] (trimmed)
GTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTT
GAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTG
ATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGTATGGAAAGTATTCTTGAAAGATAT
GAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAAT
TGAACTTTTACAAAGAAATATAAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATA
CTTCATTAAAGAGAATTAGAAGCAGGAAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGAGAAAGCGCTCCAAGAACAAAAC
AACTTGATTACTAAGAAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCCAAACTCAGCAACAGTTCATGTGTTTCCATCACATTC
TCACCACCAACCTTCCTAACCTTACAATTGGGGGGGCTTTTTGGAGGAAGGAA
GAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTG
ATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGTATGGAAAGTATTCTTGAAAGATAT
GAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAAT
TGAACTTTTACAAAGAAATATAAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATA
CTTCATTAAAGAGAATTAGAAGCAGGAAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGAGAAAGCGCTCCAAGAACAAAAC
AACTTGATTACTAAGAAGCTAAAAGAAAATGAGAAGACACAACCCAACTCATCAGGCCCAAACTCAGCAACAGTTCATGTGTTTCCATCACATTC
TCACCACCAACCTTCCTAACCTTACAATTGGGGGGGCTTTTTGGAGGAAGGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398828] | SGN-U583377 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200134 [Download][View] | Facility Assigned ID: FA0AAD27BG08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.957 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
