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EST details — SGN-E398878

Search information 
Request: 398878Match: SGN-E398878
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183311Clone name: TUS-41-N13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183311 is on microarray TOM1 spot ID 1-1-4.2.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C31210 [cLEG-12-J1] Trace: SGN-T66100 EST: SGN-E252290 Direction: 5' Facility: TIGR
Clone: SGN-C183311 [TUS-41-N13] Trace: SGN-T195193 EST: SGN-E393867 Direction: 3' Facility: INRA
Clone: SGN-C183311 [TUS-41-N13] Trace: SGN-T195637 EST: SGN-E394311 Direction: 5' Facility: INRA
Clone: SGN-C183311 [TUS-41-N13] Trace: SGN-T195823 EST: SGN-E394497 Direction: 3' Facility: INRA
Clone: SGN-C183311 [TUS-41-N13] Trace: SGN-T200438 EST: SGN-E399512 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398878Length: 619 bp (865 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398878 [] (trimmed) CCTCAAATTTATTTTTAACATATATTATAATGTTTTTACAACAATCCATCTATATTGTGGCATGTCTTTGAAAGCAAGTACCCATAGACAATATA
TTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAATTATATACCTAGT
TAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAAATGACAAAGCATCCATTGTGGCATCACAGTATTATTAGCTGCACCTTGCTGCTG
TGAAGAACTACCTCCTTCCACTTCCCCATTATCAATTACATTAGTACTCTGGTATGCTTCCCCAAGGAGAGGAGAGTCCAGTTGTTGTGGCAAAA
CAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTGTTTTGCTCCTGC
AATGCTCTGTCCTTTTTTTGAAGCACAAAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAAAGTTGAATCAAGCTGGTG
CTCCAAAATCTAAAGTTCCTTCCTACTTAAGGACTCCAAATCTTCCCCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398878] SGN-U578128 Tomato 200607 Build 2 67 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195823 [Download][View] Facility Assigned ID: FA0AAD29CG07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.939 Expected Error Rate: 0.0114 Quality Trim Threshold: 14.5