EST details — SGN-E398879
| Search information |
| Request: 398879 | Match: SGN-E398879 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183313 | Clone name: TUS-41-N15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183313 is on microarray TOM1 spot ID 1-1-2.2.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C28601 [cLEF-48-E22] | Trace: SGN-T62204 | EST: SGN-E245715 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183313 [TUS-41-N15] | Trace: SGN-T195194 | EST: SGN-E393868 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183313 [TUS-41-N15] | Trace: SGN-T195351 | EST: SGN-E394025 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183313 [TUS-41-N15] | Trace: SGN-T195638 | EST: SGN-E394312 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183313 [TUS-41-N15] | Trace: SGN-T195824 | EST: SGN-E394498 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398879 | Length: 570 bp (885 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398879 [] (trimmed)
GTCTCCCTTTATGCGAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTT
GAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTG
ATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGTATGGAAAGTATTCTTGAAAGATAT
GAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAAT
TGAACTTTTACAAAGAAATATAAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATA
CTTCATTAAAGAGAATTAGAAGCCAGGAAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGAGAAAGCGCTCCCAGAAACAAA
GAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTG
ATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGTATGGAAAGTATTCTTGAAAGATAT
GAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAAT
TGAACTTTTACAAAGAAATATAAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATA
CTTCATTAAAGAGAATTAGAAGCCAGGAAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGAGAAAGCGCTCCCAGAAACAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398879] | SGN-U583377 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195638 [Download][View] | Facility Assigned ID: FA0AAD29CG08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.948 | Expected Error Rate: 0.0103 | Quality Trim Threshold: 14.5 |
Working
