EST details — SGN-E398897

Search information 
Request: 398897Match: SGN-E398897
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172641Clone name: TUS-14-A23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172641 is on microarray TOM1 spot ID 1-1-2.1.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10734 [cLEC-6-C1] Trace: SGN-T23898 EST: SGN-E202237 Direction: 5' Facility: TIGR
Clone: SGN-C172641 [TUS-14-A23] Trace: SGN-T195096 EST: SGN-E393770 Direction: 3' Facility: INRA
Clone: SGN-C172641 [TUS-14-A23] Trace: SGN-T195295 EST: SGN-E393969 Direction: 5' Facility: INRA
Clone: SGN-C172641 [TUS-14-A23] Trace: SGN-T195553 EST: SGN-E394227 Direction: 5' Facility: INRA
Clone: SGN-C172641 [TUS-14-A23] Trace: SGN-T195553 EST: SGN-E398898 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398897Length: 425 bp (788 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398897 [] (trimmed) AACATCACCAGCTAAACAAAACCATTAATTACCACTAAGAATCCAAAGAACTTACAATAATAAAAATCTCTAATTTTCTATCTGAAAAAACTAAA
GTTAATTAATACAAAGAAAGGTAATTACTGTACTTTTTTGGTTAATAAGATGAAAAAGAAGAAAACATAAATAAAAGAAATTTAAACCTCTCCAT
CAATTGAGTTGTAGGTTGAAGGTGAAGAAGCCAATGGAAGTACCTTTACACAAGTAGTAGAGTTTACTTGTATTTGTTCTCTCATTTTGCTCTTT
CCAAGAAATGATATGAATGATCCTTTTTCCTCTATTGAACAAACATCATTCTTGATTACCTTTTTTTCTGCTTCTAATTCTATTAATCTTCTTAT
AAGCTTCTCCTCAACATCTCTAAAGAACTTGAACTTTGGAGGGGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398897] SGN-U574248 Tomato 200607 Build 2 19 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195552 [Download][View] Facility Assigned ID: FA0AAD2AA12FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.900 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5