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EST details — SGN-E398904

Search information 
Request: 398904Match: SGN-E398904
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172675Clone name: TUS-14-C9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172675 is on microarray TOM1 spot ID 1-1-8.3.20.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10788 [cLEC-6-E2] Trace: SGN-T24115 EST: SGN-E202454 Direction: 5' Facility: TIGR
Clone: SGN-C172675 [TUS-14-C9] Trace: SGN-T195101 EST: SGN-E393775 Direction: 3' Facility: INRA
Clone: SGN-C172675 [TUS-14-C9] Trace: SGN-T195554 EST: SGN-E394228 Direction: 3' Facility: INRA
Clone: SGN-C172675 [TUS-14-C9] Trace: SGN-T195554 EST: SGN-E398903 Direction: 3' Facility: INRA
Clone: SGN-C172675 [TUS-14-C9] Trace: SGN-T195555 EST: SGN-E394229 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398904Length: 613 bp (892 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398904 [] (trimmed) CAAAGATTAAAAAATATCTATAATTCTTTCAACAAACTTTGCATTTTAATATCAAAATGACTAGTTCTTTTATTGCTATATTTTCTCTTCTTCTA
CTCTCTACCATGCAATGCCATGCACAACTTTCTTCCACTTTCTACGACCGAACTTGCCCTAATGCTCTCACCACTATTCGTACAAGTATAAGACA
AGCAGTTTCAAGCGAACGTCGTATGGCTGCATCCCTCATTCGTCTTCATTTCCATGATTGTTTTGTTCAGGGTTGTGATGCTTCTCTCTTGCTTG
ATGAAACTCCAACTATTGTCAGTGAGAAGACAGCGCTGCCAAATCTTGGATCAGTTAGAGGCTTTGGTGTTATAGAAGATGCAAAAAGAGAGGTT
GAGAAAATATGTCCTGGAGTTGTATCGTGTGCTGACATACTTGCAGTTGCTGCTAGAGATGCATCAAGTCTCGTTGGCGGTCCATCATGGACAGT
GAAACTCGGAAGAAAAGACTCAACCACTGCAAGTCATACTGTTGCGGAAACTGATCTTCCTGGTCCTTTTGATCCTCTTAATAAGCTTATTTCTG
GCTTTGCCAACAAAGGCCTTAGCACAAGGAATATGGTTGCTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398904] SGN-U579084 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200166 [Download][View] Facility Assigned ID: FA0AAD2AB05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5