EST details — SGN-E398934
| Search information |
| Request: 398934 | Match: SGN-E398934 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172775 | Clone name: TUS-14-G13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172775 is on microarray TOM1 spot ID 1-1-4.3.20.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C172775 [TUS-14-G13] | Trace: SGN-T195119 | EST: SGN-E393793 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172775 [TUS-14-G13] | Trace: SGN-T195306 | EST: SGN-E393980 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172775 [TUS-14-G13] | Trace: SGN-T195306 | EST: SGN-E398933 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172775 [TUS-14-G13] | Trace: SGN-T195307 | EST: SGN-E393981 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172775 [TUS-14-G13] | Trace: SGN-T195574 | EST: SGN-E394248 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398934 | Length: 576 bp (881 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398934 [] (trimmed)
AGAAAATATAGTTGCTTGAGGATAATTACAGCTCTCTATCAGCACCATTCATTTGGCAAATCCAGCGGTGCAGTGAAATTTTCTCTTCTCTCCAT
CATCTCACTCTCTGCAAAAGCAAGATTTCATGGTTGGGCCTTAACTCTTTTGAGCAACCACACACCGTTCCTCTATGGCGACTTCTTTGAATTCT
GTTCTGGGCTTTCCGTCAACCCTACAGGCAAACTACTGGAATCTATCTGGGAGTGCCTCTCTGCAGAAGGTTGCACACTTCCCATCTACCTTTCA
GATGCGGGGGTTAAGAAGATGTGTACCAGTTACTAGACATAATTTCTATCTTTTAGTTGCTAAAAGTGATCGTCTTGAAACGGAAGTTAGTGATA
AGGACTCTGAAAATGCTGAAAGGTCATACTCCGAAGCTATTACACCAACTGTGAGGACGTCATCCTTTGAATCTTCTAAAACAGAGGGGGATGTG
CAACCCATTGGTCAAACTGATTCGGCCGTGCAAGAAGCCGAAAGCTTTCAAATGGGCCTGGAACTTTCTGGCAAACTTGAAAGAAGAAGCATCTT
CCTCCA
CATCTCACTCTCTGCAAAAGCAAGATTTCATGGTTGGGCCTTAACTCTTTTGAGCAACCACACACCGTTCCTCTATGGCGACTTCTTTGAATTCT
GTTCTGGGCTTTCCGTCAACCCTACAGGCAAACTACTGGAATCTATCTGGGAGTGCCTCTCTGCAGAAGGTTGCACACTTCCCATCTACCTTTCA
GATGCGGGGGTTAAGAAGATGTGTACCAGTTACTAGACATAATTTCTATCTTTTAGTTGCTAAAAGTGATCGTCTTGAAACGGAAGTTAGTGATA
AGGACTCTGAAAATGCTGAAAGGTCATACTCCGAAGCTATTACACCAACTGTGAGGACGTCATCCTTTGAATCTTCTAAAACAGAGGGGGATGTG
CAACCCATTGGTCAAACTGATTCGGCCGTGCAAGAAGCCGAAAGCTTTCAAATGGGCCTGGAACTTTCTGGCAAACTTGAAAGAAGAAGCATCTT
CCTCCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398934] | SGN-U582894 | Tomato 200607 | Build 2 | 30 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195574 [Download][View] | Facility Assigned ID: FA0AAD2AD07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0103 | Quality Trim Threshold: 14.5 |
Working
