EST details — SGN-E398953

Search information 
Request: 398953Match: SGN-E398953
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172833Clone name: TUS-14-I23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172833 is on microarray TOM1 spot ID 1-1-2.1.20.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C11015 [cLEC-6-O22] Trace: SGN-T24152 EST: SGN-E202491 Direction: 5' Facility: TIGR
Clone: SGN-C172833 [TUS-14-I23] Trace: SGN-T195129 EST: SGN-E393803 Direction: 5' Facility: INRA
Clone: SGN-C172833 [TUS-14-I23] Trace: SGN-T195586 EST: SGN-E394260 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398953Length: 647 bp (832 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398953 [] (trimmed) AGCTGTTGAGGATTTTGGATCAACTGAAATTGATCCGCTGGTTGACAATATGCTACCAGAAACAGCGCCTTCTGCAGAACAAGATCATTACTTTG
AGGATTCTGTCAAAGACTTAAATAGTGATCAATTGAACTCAGTGGGAGTTGAAGTTCCTTCTAGAGACGTGAGACCTAAATTTCCGGAGATGAGC
CCTCAGCATCACAAGCAGGCAAAAGATAAGCAACAGAAAGCAAAGGAACTTGCTGTTGGAAGGCGTGAAAGAAAACATCTTTCTTCTAGGCCAAG
TCTAGCAGATGCTGGCACATCATTTGAAAGTGGGGTTAGACGAAGCAAACGAATGAAGACAAGGCCTTTGGAATATTGGAAAGGCGAAAGATTAT
TATATGGACGGGTTGATGAGGGTTTGAAGCTTGTTGGCTTGAAATACATCTCTCCGGGAAAGGGATCATTTAAGGTGAAGTCTTACATTCCTGAT
GACTACAAAGACCTAGTTGATTTGGCAGCTCGCTATTGATTTTCTAACAGCATCGATGGATGGGTTAGCTTTCTGGATCTTGTCCCATGCTTCAG
TTTTATAAACAAATGTAGCGTAATGTACCCGAGGTAGGTTTATAACATTGTGAGCCTTGAATTATTATCTTTAATTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398953] SGN-U585767 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200183 [Download][View] Facility Assigned ID: FA0AAD2AE12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0040 Quality Trim Threshold: 14.5