EST details — SGN-E399019
| Search information |
| Request: 399019 | Match: SGN-E399019 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172640 | Clone name: TUS-14-A22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172640 is on microarray TOM1 spot ID 1-1-3.1.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10732 [cLEC-6-B6] | Trace: SGN-T24021 | EST: SGN-E202360 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172640 [TUS-14-A22] | Trace: SGN-T195206 | EST: SGN-E393880 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172640 [TUS-14-A22] | Trace: SGN-T195649 | EST: SGN-E394323 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172640 [TUS-14-A22] | Trace: SGN-T195773 | EST: SGN-E394447 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172640 [TUS-14-A22] | Trace: SGN-T195773 | EST: SGN-E399018 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399019 | Length: 675 bp (833 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399019 [] (trimmed)
AATAATATTCTCATAATACGTAATTATTCATTTAGAATAAAGTTTTCTTATACCTTCTTTTGATTATCTATTAATCATTACAAATGGAGAGAAAA
ACATCTCAAATCCAACCACCAACTTATGGAGATTTCATCACTATTCTTAGTATTGATGGAGGTGGCATTCGAGGAATTATTCCAGCTACCATCCT
CACTTTTCTTGAATCACAACTTCAGGAGTTGGATGGAAAAAATGCAAGAATTGCAGATTACTTTGATGTTATTGCCGGAACTAGCACCGGTGGCC
TTGTTACGGCCATGTTAACGGCTCCAGATGAAAATCATCGTCCACTTTATGCTGCTAAGGATATTACACCGTTCTATTTAGAGCATTGTCCAAAA
ATATTTCCACAAAAGAAATGTGGTTTGTTTGCTCCAATTGGGAAGATGGTGCGAGCTTTAATAGGGCCAAAATATGATGGAAAGTATCTACATGA
AGTCGTAAAGGAAAAATTGAAAGATATTTGCATTAGTAATACTATTACTAATGTTGTTATTCCAACTTTTGATATCAAAAAGTTGCAACCAACCA
TTTTCTCCACTTATGAGACGAAACGATCAACATGTTGTGATGCAAAATTATCGGATATTTGTATTAGTACATCAGCAGCTCCAACTTATCTTCCT
GCTCATTATT
ACATCTCAAATCCAACCACCAACTTATGGAGATTTCATCACTATTCTTAGTATTGATGGAGGTGGCATTCGAGGAATTATTCCAGCTACCATCCT
CACTTTTCTTGAATCACAACTTCAGGAGTTGGATGGAAAAAATGCAAGAATTGCAGATTACTTTGATGTTATTGCCGGAACTAGCACCGGTGGCC
TTGTTACGGCCATGTTAACGGCTCCAGATGAAAATCATCGTCCACTTTATGCTGCTAAGGATATTACACCGTTCTATTTAGAGCATTGTCCAAAA
ATATTTCCACAAAAGAAATGTGGTTTGTTTGCTCCAATTGGGAAGATGGTGCGAGCTTTAATAGGGCCAAAATATGATGGAAAGTATCTACATGA
AGTCGTAAAGGAAAAATTGAAAGATATTTGCATTAGTAATACTATTACTAATGTTGTTATTCCAACTTTTGATATCAAAAAGTTGCAACCAACCA
TTTTCTCCACTTATGAGACGAAACGATCAACATGTTGTGATGCAAAATTATCGGATATTTGTATTAGTACATCAGCAGCTCCAACTTATCTTCCT
GCTCATTATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399019] | SGN-U577730 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200202 [Download][View] | Facility Assigned ID: FA0AAD2BA11RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.957 | Expected Error Rate: 0.0059 | Quality Trim Threshold: 14.5 |
Working
